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The map label for this gene is yfjD [C]

Identifier: 218710871

GI number: 218710871

Start: 3113993

End: 3115144

Strand: Direct

Name: yfjD [C]

Synonym: VS_2955

Alternate gene names: 218710871

Gene position: 3113993-3115144 (Clockwise)

Preceding gene: 218710868

Following gene: 218710873

Centisome position: 94.38

GC content: 46.53

Gene sequence:

>1152_bases
ATGCTGCTGCTAACTATTTACGTCTCCATTGCTATTGGAGTTTCTTTCATTTGTTCTGTTTTGGAAGCTGTACTTTTGAG
TATTAGTCCGAGCTACATTGCTCAACTAAAACAAAATGGGCACCCTGCAGCAGAGTCATTAGACAAACTGAAAACCGACA
TTGACCGCCCGCTTGCGTCAATTTTAACGCTCAACACCATCGCGCACACCATAGGTGCAGCGACAGCGGGTGCACAAGCA
GCAGTCGTTTTTGGTAGCCAATGGTTAGGCGTATTCTCTGCCGTATTAACTCTGGGTATTTTAGTTCTGTCTGAGATTGT
TCCAAAAACCATTGGCGCAACCTACTGGCGTCAACTTGCTCCAGCATCATCAAATGTGCTTCGCTGGATGGTCTTTTTCC
TAACACCATTTGTGTGGTTCTCAGAGCAAATTACCAAACGTTTAGCTCGCGGCCACCAGGCACCAAAAATGCGTGATGAG
CTATCTGCAATGGCTATTTTGGCAAAAGAGAGCGGTGAATTTGCTGAAGGTGAATCAAAAATTCTGAGCAATCTGTTAGG
TATTCAAGATGTGCCCGTGACTCAAGTCATGACACCACGCCCTGTTGTATTCCGCGTCGATGCAGAAATGAGTGTCAATA
CGTTCCTAGAACAACACAAAGACACGCCATTCTCACGCCCACTGGTTTACAGCGAGCAAACTGACAATATCATCGGTTTT
GTCCACCGCTTAGAGCTGTTTAGATTGCAGCAAGCGGGTTGTGGTGAGAAGGCTCTGGGTGAAGTGATGCGCCCTATCCA
CGTCTTGCTAAACAACATGGGCTTAGCTAAGGCCTTTGACCAAATGATGGCAAACCGCCTGCAACTGTCTTTAGTTGTGG
ACGAGTACGGCACAATTCAGGGCATCATCACCCTAGAAGATATCTTTGAACACCTAGTGGGTGAAGAGATTGTCGACGAA
GCCGATAAAACCACAGACATGCAAGAACTGGCGTTCCAACGCTGGGAAACGTGGAAAGAGACACACGGTGTTATCGAAAA
CCGCGATGAAGAGGACGAGCTAGAAGAAAAAACTCTAGCAGACAACGACACCTCAGACTCAAAGTCAGCGGATGAAAGCA
AGGTTCAAAAAGAAGACAAGAAAGACGCTTAA

Upstream 100 bases:

>100_bases
AGGGGCTGAGAGCAAAATTAATGATGACCTAGCCACTACTTATTCTCTATAATCCACGCTGAATCGCTGCTAAAGCGTAC
AATTTAATTTAAGGGCAAAC

Downstream 100 bases:

>100_bases
TCTAAATTTGATAGCGTCAGATACAACAAAGGCTCCCTAGGGAGCCTTTGTTTCTATTCGTACCTTGATGCAATTGCAGA
TTATAGTGCAACACCAATGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MLLLTIYVSIAIGVSFICSVLEAVLLSISPSYIAQLKQNGHPAAESLDKLKTDIDRPLASILTLNTIAHTIGAATAGAQA
AVVFGSQWLGVFSAVLTLGILVLSEIVPKTIGATYWRQLAPASSNVLRWMVFFLTPFVWFSEQITKRLARGHQAPKMRDE
LSAMAILAKESGEFAEGESKILSNLLGIQDVPVTQVMTPRPVVFRVDAEMSVNTFLEQHKDTPFSRPLVYSEQTDNIIGF
VHRLELFRLQQAGCGEKALGEVMRPIHVLLNNMGLAKAFDQMMANRLQLSLVVDEYGTIQGIITLEDIFEHLVGEEIVDE
ADKTTDMQELAFQRWETWKETHGVIENRDEEDELEEKTLADNDTSDSKSADESKVQKEDKKDA

Sequences:

>Translated_383_residues
MLLLTIYVSIAIGVSFICSVLEAVLLSISPSYIAQLKQNGHPAAESLDKLKTDIDRPLASILTLNTIAHTIGAATAGAQA
AVVFGSQWLGVFSAVLTLGILVLSEIVPKTIGATYWRQLAPASSNVLRWMVFFLTPFVWFSEQITKRLARGHQAPKMRDE
LSAMAILAKESGEFAEGESKILSNLLGIQDVPVTQVMTPRPVVFRVDAEMSVNTFLEQHKDTPFSRPLVYSEQTDNIIGF
VHRLELFRLQQAGCGEKALGEVMRPIHVLLNNMGLAKAFDQMMANRLQLSLVVDEYGTIQGIITLEDIFEHLVGEEIVDE
ADKTTDMQELAFQRWETWKETHGVIENRDEEDELEEKTLADNDTSDSKSADESKVQKEDKKDA
>Mature_383_residues
MLLLTIYVSIAIGVSFICSVLEAVLLSISPSYIAQLKQNGHPAAESLDKLKTDIDRPLASILTLNTIAHTIGAATAGAQA
AVVFGSQWLGVFSAVLTLGILVLSEIVPKTIGATYWRQLAPASSNVLRWMVFFLTPFVWFSEQITKRLARGHQAPKMRDE
LSAMAILAKESGEFAEGESKILSNLLGIQDVPVTQVMTPRPVVFRVDAEMSVNTFLEQHKDTPFSRPLVYSEQTDNIIGF
VHRLELFRLQQAGCGEKALGEVMRPIHVLLNNMGLAKAFDQMMANRLQLSLVVDEYGTIQGIITLEDIFEHLVGEEIVDE
ADKTTDMQELAFQRWETWKETHGVIENRDEEDELEEKTLADNDTSDSKSADESKVQKEDKKDA

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=336, Percent_Identity=23.5119047619048, Blast_Score=82, Evalue=1e-15,
Organism=Escherichia coli, GI145693175, Length=305, Percent_Identity=24.5901639344262, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1790664, Length=233, Percent_Identity=24.4635193133047, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1786879, Length=163, Percent_Identity=25.7668711656442, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR002550 [H]

Pfam domain/function: PF00571 CBS; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 42534; Mature: 42534

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS00039 DEAD_ATP_HELICASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLLTIYVSIAIGVSFICSVLEAVLLSISPSYIAQLKQNGHPAAESLDKLKTDIDRPLAS
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
ILTLNTIAHTIGAATAGAQAAVVFGSQWLGVFSAVLTLGILVLSEIVPKTIGATYWRQLA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PASSNVLRWMVFFLTPFVWFSEQITKRLARGHQAPKMRDELSAMAILAKESGEFAEGESK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHH
ILSNLLGIQDVPVTQVMTPRPVVFRVDAEMSVNTFLEQHKDTPFSRPLVYSEQTDNIIGF
HHHHHHCCCCCCHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCEEECCCCCHHHHH
VHRLELFRLQQAGCGEKALGEVMRPIHVLLNNMGLAKAFDQMMANRLQLSLVVDEYGTIQ
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEECCCCHH
GIITLEDIFEHLVGEEIVDEADKTTDMQELAFQRWETWKETHGVIENRDEEDELEEKTLA
HEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHC
DNDTSDSKSADESKVQKEDKKDA
CCCCCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MLLLTIYVSIAIGVSFICSVLEAVLLSISPSYIAQLKQNGHPAAESLDKLKTDIDRPLAS
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
ILTLNTIAHTIGAATAGAQAAVVFGSQWLGVFSAVLTLGILVLSEIVPKTIGATYWRQLA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PASSNVLRWMVFFLTPFVWFSEQITKRLARGHQAPKMRDELSAMAILAKESGEFAEGESK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHH
ILSNLLGIQDVPVTQVMTPRPVVFRVDAEMSVNTFLEQHKDTPFSRPLVYSEQTDNIIGF
HHHHHHCCCCCCHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCEEECCCCCHHHHH
VHRLELFRLQQAGCGEKALGEVMRPIHVLLNNMGLAKAFDQMMANRLQLSLVVDEYGTIQ
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEECCCCHH
GIITLEDIFEHLVGEEIVDEADKTTDMQELAFQRWETWKETHGVIENRDEEDELEEKTLA
HEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHC
DNDTSDSKSADESKVQKEDKKDA
CCCCCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]