| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is damX [C]
Identifier: 218710787
GI number: 218710787
Start: 3017470
End: 3018987
Strand: Reverse
Name: damX [C]
Synonym: VS_2870
Alternate gene names: 218710787
Gene position: 3018987-3017470 (Counterclockwise)
Preceding gene: 218710788
Following gene: 218710786
Centisome position: 91.5
GC content: 44.07
Gene sequence:
>1518_bases ATGAGTTTGGCTCATGATTTAAGAGTATTGGAGTTAGAGTCTCAAGTTGAGTTGCTAGAGCGTTTACAGCTTTTAACTAA CTTTGGTTCAAACTTTGTAAATGTTGCTGGTAAAACGGGTTCTGGCCGATCTTGGTTAGCTCAGCGTTATCTTGAAGCAT GGTCGACAGAAAAAAATCAGTGTTTACTGCTTTGTCACCCAAGCCAAGACGATCAACAGCGCCGCGCACTTATTCTTAGT CAGATTGTTTCTGACCCACTCTTTAATCAACATGATTCTTTATCTGATAGCCTTGCTAGGTTGCTGGATGGAGATACGTG TAATGTGCTTATTGTCATTGATGACGCCCACCGACTGTCTGAGCTACTGGTATCAGAATTATGGATGTTGGTACTTGAAT CTCAATCAAACCCTCAATGGACGATTAATATCGTTCTGTTCTCGCAAACTGGTCACCTAGACACGTTATTAACACGACTT AGTTACGGTCAGCCGCACAAACCTATCGCCCTTGAGATCGATGATCTTTCGCAACCAGAAGCTGAACATTTCTTTGAGTC ACTGGTGATTCGATATGTCGATGATGAGTCAGAATCTCGGGTGCGAAATGCATTTAAAAAAGCGCAACCTTTGCCCGGTG AGCTAATGGCCTTAGGAGAATTGAAAGTGGAAAAAAGGATTATTATTCGCTCAATCATTGGTTCACCTATCAATATTGCG ATTGTGGTGGCGTTGTTGTTGCTTGTTATCGGCGGCGGTTACTGGTGGATGTTTAATCAACCAACGCCTGACGATAAAGC GCAATCTATTATCGCCCCTATTGAGCAGACAGTTATTCCAACGTTGGAAGTGGAAAATGTAACTGAGCAAGCCACAATCG ACGGAACTGTCGATTCTGAAGCCGAAGTTGATATGAGTTATCAAGGTGCTGACGATGACAGCTCTTCTCTGCCGCCGGTC GTGGTTGAAGAGACAGCCAGTGTTGGTCAGGTAGAACAAGACCAGCAACGTGTGGTGATCACCTCTGATGTGGTCGATGC TTTGCTTGATGATAAACCTGAGAGTGTTGATACCAGTGCAATTGAAGCTGTAGTTGAAGAAAAGACAGATGCAGTCGTTA TCCCGCAGCCTGATGTTGTGGAACGTGAGTCATTGCCGGCAACGAATGAAGGTTCAGAGCTAACACAATCAGCACCTCCG ACAAAAAAAATCACATTTTCATTTGCACGCGAAGAGCTACAAGCTATCTCGCCGCGCGCTTATACCCTGCAGTTGAGTGC GATGACATCATTGGAAGATGTACAATCTTTCATTGAAGAGTATGAGCTTGAGAACAAGGTTCGTATTTACCCAACACTTC GTAACGACACCAAGTGGTTTATTATCACTTATCAAGATTACCCAACGATTCAAGTGGCGCGAGATGCGGCAAGTGCGTTA TCAAAACCACTTCAACAGTTGGAACCTTGGGCAAAATCGATGAATCAAGTGCATCGAGAGATAGAACGTGCGAAATAA
Upstream 100 bases:
>100_bases GATTTCTGCCGTACTCTTTAAATTCGGTTATGAGGTTGCCTAGCTAAACTCTAGGCAACTCAAGCGCTTTACAGATCGAA CTTATCAGTAGGGATCCCCA
Downstream 100 bases:
>100_bases CCCTGAGCTTAGCCTCAAAATATGTTACATTCCGCAGCCTTATTTTTGAGTTGATAGATAGAGCAGTAAATGAAAAAGCA GCGTGCCTTTCTAAAATGGG
Product: hypothetical protein
Products: NA
Alternate protein names: DamX-Like Protein; Sporulation And Repeat Protein
Number of amino acids: Translated: 505; Mature: 504
Protein sequence:
>505_residues MSLAHDLRVLELESQVELLERLQLLTNFGSNFVNVAGKTGSGRSWLAQRYLEAWSTEKNQCLLLCHPSQDDQQRRALILS QIVSDPLFNQHDSLSDSLARLLDGDTCNVLIVIDDAHRLSELLVSELWMLVLESQSNPQWTINIVLFSQTGHLDTLLTRL SYGQPHKPIALEIDDLSQPEAEHFFESLVIRYVDDESESRVRNAFKKAQPLPGELMALGELKVEKRIIIRSIIGSPINIA IVVALLLLVIGGGYWWMFNQPTPDDKAQSIIAPIEQTVIPTLEVENVTEQATIDGTVDSEAEVDMSYQGADDDSSSLPPV VVEETASVGQVEQDQQRVVITSDVVDALLDDKPESVDTSAIEAVVEEKTDAVVIPQPDVVERESLPATNEGSELTQSAPP TKKITFSFAREELQAISPRAYTLQLSAMTSLEDVQSFIEEYELENKVRIYPTLRNDTKWFIITYQDYPTIQVARDAASAL SKPLQQLEPWAKSMNQVHREIERAK
Sequences:
>Translated_505_residues MSLAHDLRVLELESQVELLERLQLLTNFGSNFVNVAGKTGSGRSWLAQRYLEAWSTEKNQCLLLCHPSQDDQQRRALILS QIVSDPLFNQHDSLSDSLARLLDGDTCNVLIVIDDAHRLSELLVSELWMLVLESQSNPQWTINIVLFSQTGHLDTLLTRL SYGQPHKPIALEIDDLSQPEAEHFFESLVIRYVDDESESRVRNAFKKAQPLPGELMALGELKVEKRIIIRSIIGSPINIA IVVALLLLVIGGGYWWMFNQPTPDDKAQSIIAPIEQTVIPTLEVENVTEQATIDGTVDSEAEVDMSYQGADDDSSSLPPV VVEETASVGQVEQDQQRVVITSDVVDALLDDKPESVDTSAIEAVVEEKTDAVVIPQPDVVERESLPATNEGSELTQSAPP TKKITFSFAREELQAISPRAYTLQLSAMTSLEDVQSFIEEYELENKVRIYPTLRNDTKWFIITYQDYPTIQVARDAASAL SKPLQQLEPWAKSMNQVHREIERAK >Mature_504_residues SLAHDLRVLELESQVELLERLQLLTNFGSNFVNVAGKTGSGRSWLAQRYLEAWSTEKNQCLLLCHPSQDDQQRRALILSQ IVSDPLFNQHDSLSDSLARLLDGDTCNVLIVIDDAHRLSELLVSELWMLVLESQSNPQWTINIVLFSQTGHLDTLLTRLS YGQPHKPIALEIDDLSQPEAEHFFESLVIRYVDDESESRVRNAFKKAQPLPGELMALGELKVEKRIIIRSIIGSPINIAI VVALLLLVIGGGYWWMFNQPTPDDKAQSIIAPIEQTVIPTLEVENVTEQATIDGTVDSEAEVDMSYQGADDDSSSLPPVV VEETASVGQVEQDQQRVVITSDVVDALLDDKPESVDTSAIEAVVEEKTDAVVIPQPDVVERESLPATNEGSELTQSAPPT KKITFSFAREELQAISPRAYTLQLSAMTSLEDVQSFIEEYELENKVRIYPTLRNDTKWFIITYQDYPTIQVARDAASALS KPLQQLEPWAKSMNQVHREIERAK
Specific function: Directly Or Indirectly Interferes With Cell Division. [C]
COG id: COG3267
COG function: function code U; Type II secretory pathway, component ExeA (predicted ATPase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56513; Mature: 56382
Theoretical pI: Translated: 4.19; Mature: 4.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLAHDLRVLELESQVELLERLQLLTNFGSNFVNVAGKTGSGRSWLAQRYLEAWSTEKNQ CCCHHCCEEEEHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCC CLLLCHPSQDDQQRRALILSQIVSDPLFNQHDSLSDSLARLLDGDTCNVLIVIDDAHRLS EEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCHHHHH ELLVSELWMLVLESQSNPQWTINIVLFSQTGHLDTLLTRLSYGQPHKPIALEIDDLSQPE HHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHCCCCCCCCEEEEECCCCCCH AEHFFESLVIRYVDDESESRVRNAFKKAQPLPGELMALGELKVEKRIIIRSIIGSPINIA HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH IVVALLLLVIGGGYWWMFNQPTPDDKAQSIIAPIEQTVIPTLEVENVTEQATIDGTVDSE HHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCEECCCCCCC AEVDMSYQGADDDSSSLPPVVVEETASVGQVEQDQQRVVITSDVVDALLDDKPESVDTSA CCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCCCCHHH IEAVVEEKTDAVVIPQPDVVERESLPATNEGSELTQSAPPTKKITFSFAREELQAISPRA HHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCE YTLQLSAMTSLEDVQSFIEEYELENKVRIYPTLRNDTKWFIITYQDYPTIQVARDAASAL EEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHH SKPLQQLEPWAKSMNQVHREIERAK HHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SLAHDLRVLELESQVELLERLQLLTNFGSNFVNVAGKTGSGRSWLAQRYLEAWSTEKNQ CCHHCCEEEEHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCC CLLLCHPSQDDQQRRALILSQIVSDPLFNQHDSLSDSLARLLDGDTCNVLIVIDDAHRLS EEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCHHHHH ELLVSELWMLVLESQSNPQWTINIVLFSQTGHLDTLLTRLSYGQPHKPIALEIDDLSQPE HHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHCCCCCCCCEEEEECCCCCCH AEHFFESLVIRYVDDESESRVRNAFKKAQPLPGELMALGELKVEKRIIIRSIIGSPINIA HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH IVVALLLLVIGGGYWWMFNQPTPDDKAQSIIAPIEQTVIPTLEVENVTEQATIDGTVDSE HHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCEECCCCCCC AEVDMSYQGADDDSSSLPPVVVEETASVGQVEQDQQRVVITSDVVDALLDDKPESVDTSA CCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCCCCHHH IEAVVEEKTDAVVIPQPDVVERESLPATNEGSELTQSAPPTKKITFSFAREELQAISPRA HHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCE YTLQLSAMTSLEDVQSFIEEYELENKVRIYPTLRNDTKWFIITYQDYPTIQVARDAASAL EEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHH SKPLQQLEPWAKSMNQVHREIERAK HHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA