| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is dam [H]
Identifier: 218710786
GI number: 218710786
Start: 3016540
End: 3017400
Strand: Reverse
Name: dam [H]
Synonym: VS_2869
Alternate gene names: 218710786
Gene position: 3017400-3016540 (Counterclockwise)
Preceding gene: 218710787
Following gene: 218710785
Centisome position: 91.46
GC content: 45.3
Gene sequence:
>861_bases ATGAAAAAGCAGCGTGCCTTTCTAAAATGGGCTGGTGGTAAATATGGCCTAGTTGAAGACATCCAACGTCACCTGCCACC TGCTCGTAAATTGGTAGAACCGTTTGTCGGTGCCGGATCAGTATTTCTGAATACTGATTTTGAACAGTACCTACTTGCAG ATATTAATCCTGATCTTATCAACCTATACAATCTACTTAAAACCGATCCTGAAACCTATATCACTGAAGCGAAGCGTTGG TTCTGTCCGGAGAATAACCGTAGAGAAGTGTTCTTAGATGTTCGCGCTGAGTTCAACGGTACAGACAACGTTATGTATCG CTCGTTAGCTTTCTTGTACATGAACCGATTTGGCTTCAATGGCTTGTGTCGTTACAACAAGAAGGGCGGTTTTAACGTTC CGTTTGGTTCTTATAAAAAACCTTATTTCCCTGAAGCCGAGCTAGAGTTTTTTGCTGAGAAAGCGAAAAAAGCCACCTTC GTCTGTGAGGGATACCATGAAACCTTTAGCCGCGCGCGTAAAGGTTGCGTGGTTTACTGTGATCCTCCATACGCACCGCT GTCGAACACGGCTAACTTTACCTCTTACGCAGGTAATGGTTTTAGCTTAGATGACCAAGCTGCACTGGCGGATGTCGCTG AAAAAGCGGCGATGGAACGCGATATTCCTGTCTTGATTTCAAACCATGACACCACCTTAACGCGCCGTTTATACCATGGT GCGGAACTGAACGTGGTCAAGGTTAAGCGCACCATTAGCCGTAATGGCGCAGGGCGCAATAAAGTTGATGAGTTACTGGC GCTTTTCCATAAAGAGAAAAACCAGCAACACGCTTCAACAGAATTGTCGTCGTCAGAATAA
Upstream 100 bases:
>100_bases AGTGCATCGAGAGATAGAACGTGCGAAATAACCCTGAGCTTAGCCTCAAAATATGTTACATTCCGCAGCCTTATTTTTGA GTTGATAGATAGAGCAGTAA
Downstream 100 bases:
>100_bases TCCTCGAACTCATTAAATTGAGTGACCCACGGGTACTTTCTTAAACTAATCTTTCGAACTGCTAGGATCTGCTTAGGTGC TTAGGTAGAATTGCACACCA
Product: DNA adenine methylase
Products: NA
Alternate protein names: DNA adenine methyltransferase; Deoxyadenosyl-methyltransferase; M.VchADam [H]
Number of amino acids: Translated: 286; Mature: 286
Protein sequence:
>286_residues MKKQRAFLKWAGGKYGLVEDIQRHLPPARKLVEPFVGAGSVFLNTDFEQYLLADINPDLINLYNLLKTDPETYITEAKRW FCPENNRREVFLDVRAEFNGTDNVMYRSLAFLYMNRFGFNGLCRYNKKGGFNVPFGSYKKPYFPEAELEFFAEKAKKATF VCEGYHETFSRARKGCVVYCDPPYAPLSNTANFTSYAGNGFSLDDQAALADVAEKAAMERDIPVLISNHDTTLTRRLYHG AELNVVKVKRTISRNGAGRNKVDELLALFHKEKNQQHASTELSSSE
Sequences:
>Translated_286_residues MKKQRAFLKWAGGKYGLVEDIQRHLPPARKLVEPFVGAGSVFLNTDFEQYLLADINPDLINLYNLLKTDPETYITEAKRW FCPENNRREVFLDVRAEFNGTDNVMYRSLAFLYMNRFGFNGLCRYNKKGGFNVPFGSYKKPYFPEAELEFFAEKAKKATF VCEGYHETFSRARKGCVVYCDPPYAPLSNTANFTSYAGNGFSLDDQAALADVAEKAAMERDIPVLISNHDTTLTRRLYHG AELNVVKVKRTISRNGAGRNKVDELLALFHKEKNQQHASTELSSSE >Mature_286_residues MKKQRAFLKWAGGKYGLVEDIQRHLPPARKLVEPFVGAGSVFLNTDFEQYLLADINPDLINLYNLLKTDPETYITEAKRW FCPENNRREVFLDVRAEFNGTDNVMYRSLAFLYMNRFGFNGLCRYNKKGGFNVPFGSYKKPYFPEAELEFFAEKAKKATF VCEGYHETFSRARKGCVVYCDPPYAPLSNTANFTSYAGNGFSLDDQAALADVAEKAAMERDIPVLISNHDTTLTRRLYHG AELNVVKVKRTISRNGAGRNKVDELLALFHKEKNQQHASTELSSSE
Specific function: Methylates DNA within the sequence GATC. Directly involved in methyl-directed DNA mismatch repair [H]
COG id: COG0338
COG function: function code L; Site-specific DNA methylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1789789, Length=269, Percent_Identity=63.1970260223048, Blast_Score=351, Evalue=3e-98,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023095 - InterPro: IPR002052 - InterPro: IPR012327 [H]
Pfam domain/function: PF02086 MethyltransfD12 [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 32576; Mature: 32576
Theoretical pI: Translated: 8.64; Mature: 8.64
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKQRAFLKWAGGKYGLVEDIQRHLPPARKLVEPFVGAGSVFLNTDFEQYLLADINPDLI CCCCCCCEEECCCCCCHHHHHHHHCCHHHHHHHHHHCCCEEEEECCHHHHHHHCCCHHHH NLYNLLKTDPETYITEAKRWFCPENNRREVFLDVRAEFNGTDNVMYRSLAFLYMNRFGFN HHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCC GLCRYNKKGGFNVPFGSYKKPYFPEAELEFFAEKAKKATFVCEGYHETFSRARKGCVVYC CEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEEECCHHHHHHHHHCCEEEEE DPPYAPLSNTANFTSYAGNGFSLDDQAALADVAEKAAMERDIPVLISNHDTTLTRRLYHG CCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCC AELNVVKVKRTISRNGAGRNKVDELLALFHKEKNQQHASTELSSSE CCCEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHCCCCCCC >Mature Secondary Structure MKKQRAFLKWAGGKYGLVEDIQRHLPPARKLVEPFVGAGSVFLNTDFEQYLLADINPDLI CCCCCCCEEECCCCCCHHHHHHHHCCHHHHHHHHHHCCCEEEEECCHHHHHHHCCCHHHH NLYNLLKTDPETYITEAKRWFCPENNRREVFLDVRAEFNGTDNVMYRSLAFLYMNRFGFN HHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCC GLCRYNKKGGFNVPFGSYKKPYFPEAELEFFAEKAKKATFVCEGYHETFSRARKGCVVYC CEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEEECCHHHHHHHHHCCEEEEE DPPYAPLSNTANFTSYAGNGFSLDDQAALADVAEKAAMERDIPVLISNHDTTLTRRLYHG CCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCC AELNVVKVKRTISRNGAGRNKVDELLALFHKEKNQQHASTELSSSE CCCEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11705940 [H]