Click here to switch to the map view.

The map label for this gene is 218710760

Identifier: 218710760

GI number: 218710760

Start: 2988325

End: 2989305

Strand: Direct

Name: 218710760

Synonym: VS_2843

Alternate gene names: NA

Gene position: 2988325-2989305 (Clockwise)

Preceding gene: 218710722

Following gene: 218710761

Centisome position: 90.57

GC content: 48.52

Gene sequence:

>981_bases
GTGATGCGAATATTTTTCCACTCATTGCTATGTACGATTGTCATCACCTTGTTAAATGGCTGCTTTTTCTTCCAAGATGA
TGACCAACGCTGGGAAATTGAACCCAACGGCGCCACCAGCTTTGCCCTAAGTAGAGATGGACGCTTCGCGCTGCTCTACT
CGCAGCAAAAACAGCTGCGCCTTTGGGATCTTGCCCAAAACAAAGAACTGGCTCAACTTGGTCCACAAGATCAATCCGAA
AATCAAGTATCGCGTATTCGCATCTCTGACAATGGTCGCTTTGCCATTACCGCCAGTCAGATGAATTTCGCCGTTTGGGA
CTTATCTTGGACACAAGCTGAAGGGCTATGGTCGATTTCCGATGGCTTAATTCGCGATGTTGATATCTCTAGCAACGGTG
AAAAAGTACTGCTGGGCCTATCTAATGGCAAAGCTATCTATGTGGACTTAGTCACCGGACGCCGTCTGGAGTTCCTCGCT
CACCGAGAAAAAGTTAATTCCGTCTCCCTATCTTCGAATGGGCGCTACGCATTATCAGGCGGTAACGACTATAAAGCTTA
CCTTTGGGATACCGAATCAGGCTTGGTATTGCGTACATTCGAGCACGAACAAAGAGTCGTACGAGTTGCCTTACAACGAG
ATGGAGAGCTAGCTTTTACCTCCGATGGAGGGAATCAAGCGATGATCTGGGATCTTGAGACAGGTGAACCTCAAGCTCAA
TTGCAGAGCTGGTCTCGACAGCTAATTTTCTCCAGTGCTCGCTTTTCTGATGACGGCAGTATGTTGGTAACAGGTACGCC
ATCTAGCCAAGTGAGCGTGTGGAATACTCAAGATGGCAAACGCATTTCTCGCCACGACGCCGAGCCATTAAAAGATGCTC
GCCCTCCTCGTGCGGTAGTGTATGATGCAGCCTTTGATGATAAGAACCGTGTGATATCGGGCACCTCTGCGGGCATTGCC
CAAGCTTGGAATGTGGATTAA

Upstream 100 bases:

>100_bases
TGGTTATTGTGCACAAATCTAATGATTAGATTGGTGTGAATACGTTAGTTATAACAATATACTAGTCATATGTCTTTCGA
CACAAACCGGATTATTGGAT

Downstream 100 bases:

>100_bases
GAACGATGACAGAAAAGCGAGTTGAACAATTAGAAAGCCGCGTGAATGACCTAGAATGTCAGTTGGCTTTCCAAGAGCAA
ACCATTGAAGAACTTAATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MMRIFFHSLLCTIVITLLNGCFFFQDDDQRWEIEPNGATSFALSRDGRFALLYSQQKQLRLWDLAQNKELAQLGPQDQSE
NQVSRIRISDNGRFAITASQMNFAVWDLSWTQAEGLWSISDGLIRDVDISSNGEKVLLGLSNGKAIYVDLVTGRRLEFLA
HREKVNSVSLSSNGRYALSGGNDYKAYLWDTESGLVLRTFEHEQRVVRVALQRDGELAFTSDGGNQAMIWDLETGEPQAQ
LQSWSRQLIFSSARFSDDGSMLVTGTPSSQVSVWNTQDGKRISRHDAEPLKDARPPRAVVYDAAFDDKNRVISGTSAGIA
QAWNVD

Sequences:

>Translated_326_residues
MMRIFFHSLLCTIVITLLNGCFFFQDDDQRWEIEPNGATSFALSRDGRFALLYSQQKQLRLWDLAQNKELAQLGPQDQSE
NQVSRIRISDNGRFAITASQMNFAVWDLSWTQAEGLWSISDGLIRDVDISSNGEKVLLGLSNGKAIYVDLVTGRRLEFLA
HREKVNSVSLSSNGRYALSGGNDYKAYLWDTESGLVLRTFEHEQRVVRVALQRDGELAFTSDGGNQAMIWDLETGEPQAQ
LQSWSRQLIFSSARFSDDGSMLVTGTPSSQVSVWNTQDGKRISRHDAEPLKDARPPRAVVYDAAFDDKNRVISGTSAGIA
QAWNVD
>Mature_326_residues
MMRIFFHSLLCTIVITLLNGCFFFQDDDQRWEIEPNGATSFALSRDGRFALLYSQQKQLRLWDLAQNKELAQLGPQDQSE
NQVSRIRISDNGRFAITASQMNFAVWDLSWTQAEGLWSISDGLIRDVDISSNGEKVLLGLSNGKAIYVDLVTGRRLEFLA
HREKVNSVSLSSNGRYALSGGNDYKAYLWDTESGLVLRTFEHEQRVVRVALQRDGELAFTSDGGNQAMIWDLETGEPQAQ
LQSWSRQLIFSSARFSDDGSMLVTGTPSSQVSVWNTQDGKRISRHDAEPLKDARPPRAVVYDAAFDDKNRVISGTSAGIA
QAWNVD

Specific function: Unknown

COG id: COG2319

COG function: function code R; FOG: WD40 repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 13 WD repeats [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6319675, Length=251, Percent_Identity=24.3027888446215, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020472
- InterPro:   IPR011600
- InterPro:   IPR015943
- InterPro:   IPR001680
- InterPro:   IPR011046
- InterPro:   IPR019782
- InterPro:   IPR019775
- InterPro:   IPR017986
- InterPro:   IPR019781 [H]

Pfam domain/function: PF00656 Peptidase_C14; PF00400 WD40 [H]

EC number: NA

Molecular weight: Translated: 36553; Mature: 36553

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS00678 WD_REPEATS_1 ; PS50082 WD_REPEATS_2 ; PS50294 WD_REPEATS_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRIFFHSLLCTIVITLLNGCFFFQDDDQRWEIEPNGATSFALSRDGRFALLYSQQKQLR
CEEHHHHHHHHHHHHHHHCCEEEEECCCCEEEECCCCCEEEEEECCCCEEEEECCCCCEE
LWDLAQNKELAQLGPQDQSENQVSRIRISDNGRFAITASQMNFAVWDLSWTQAEGLWSIS
EEECCCCCHHHHCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEEEEECCCCCEEECC
DGLIRDVDISSNGEKVLLGLSNGKAIYVDLVTGRRLEFLAHREKVNSVSLSSNGRYALSG
CCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHCCEEEECCCCCEEEEC
GNDYKAYLWDTESGLVLRTFEHEQRVVRVALQRDGELAFTSDGGNQAMIWDLETGEPQAQ
CCCEEEEEEECCCCEEEEEEHHHHHHHHHEECCCCCEEEECCCCCEEEEEEECCCCCHHH
LQSWSRQLIFSSARFSDDGSMLVTGTPSSQVSVWNTQDGKRISRHDAEPLKDARPPRAVV
HHHHHHHHEEECCEECCCCCEEEEECCCCCEEEEECCCCCCHHHCCCCCHHHCCCCCEEE
YDAAFDDKNRVISGTSAGIAQAWNVD
EEECCCCCCCEEECCCCCCCEECCCC
>Mature Secondary Structure
MMRIFFHSLLCTIVITLLNGCFFFQDDDQRWEIEPNGATSFALSRDGRFALLYSQQKQLR
CEEHHHHHHHHHHHHHHHCCEEEEECCCCEEEECCCCCEEEEEECCCCEEEEECCCCCEE
LWDLAQNKELAQLGPQDQSENQVSRIRISDNGRFAITASQMNFAVWDLSWTQAEGLWSIS
EEECCCCCHHHHCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEEEEECCCCCEEECC
DGLIRDVDISSNGEKVLLGLSNGKAIYVDLVTGRRLEFLAHREKVNSVSLSSNGRYALSG
CCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHCCEEEECCCCCEEEEC
GNDYKAYLWDTESGLVLRTFEHEQRVVRVALQRDGELAFTSDGGNQAMIWDLETGEPQAQ
CCCEEEEEEECCCCEEEEEEHHHHHHHHHEECCCCCEEEECCCCCEEEEEEECCCCCHHH
LQSWSRQLIFSSARFSDDGSMLVTGTPSSQVSVWNTQDGKRISRHDAEPLKDARPPRAVV
HHHHHHHHEEECCEECCCCCEEEEECCCCCEEEEECCCCCCHHHCCCCCHHHCCCCCEEE
YDAAFDDKNRVISGTSAGIAQAWNVD
EEECCCCCCCEEECCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]