| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218710710
Identifier: 218710710
GI number: 218710710
Start: 2958267
End: 2958809
Strand: Direct
Name: 218710710
Synonym: VS_2793
Alternate gene names: NA
Gene position: 2958267-2958809 (Clockwise)
Preceding gene: 218710709
Following gene: 218710711
Centisome position: 89.66
GC content: 47.15
Gene sequence:
>543_bases ATGAACCCCATAGCCCAACCGAGCGCCCTAACTTCTTTCTCTCCTAGTATCAAGGGAGCGGTAGAGATATTGAATCAGGG TTTAGAGTTTTTGTTAGTGATATCTGACAGCGACTATCTGACACGAGCAAAGCCGCACGTCACAAGTTCTATTGGTGAGC ATACCCGTCACACGCTCGATCTTTTTCACGCTTTGATTTTAAAAGAGAATGCGACCGTTGATTACAACACTCGTCGTCGT GGTCACCCCGTCGAATTCGACAGGTCGATTGCGTTGAAAGAGATCCATTACGTGATCAATTGGCTTGAACGATTAGACCG TAGAGATCTCGAAGCACCTATCATGATCCAAACCGAAGTTTCGATGGATACACAAGTATTCGCCAGCCTGCCTTCTACGC TAGAAAGAGAAGTCACCTTTGCCGCGCTGCACGCCAATCATCATTACGCGATGATCAAGGTGATCACGACCTTTCTTGAT GTCGAAACGTGCAACACCTTTGGTTATGCCCCAACCACCAGCAGCTATTTGAGGGAGCAATAA
Upstream 100 bases:
>100_bases CAGTCTCCTTCTTTTAAGAGCTTATATAACGCGTGGCAAGAAGAGCGACGTCTTGTTCAACAATATCCGACCACCGATTA ACTTTGTACGAGGATCATGA
Downstream 100 bases:
>100_bases TCATGTGTTCAGTATCTTGGCTGCTTGAAGACAATGGCTATCAGGTCTTCTTTAATCGTGATGAACAAAAGACACGGGCA CTGGCGATGCCACCTAAACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 180; Mature: 180
Protein sequence:
>180_residues MNPIAQPSALTSFSPSIKGAVEILNQGLEFLLVISDSDYLTRAKPHVTSSIGEHTRHTLDLFHALILKENATVDYNTRRR GHPVEFDRSIALKEIHYVINWLERLDRRDLEAPIMIQTEVSMDTQVFASLPSTLEREVTFAALHANHHYAMIKVITTFLD VETCNTFGYAPTTSSYLREQ
Sequences:
>Translated_180_residues MNPIAQPSALTSFSPSIKGAVEILNQGLEFLLVISDSDYLTRAKPHVTSSIGEHTRHTLDLFHALILKENATVDYNTRRR GHPVEFDRSIALKEIHYVINWLERLDRRDLEAPIMIQTEVSMDTQVFASLPSTLEREVTFAALHANHHYAMIKVITTFLD VETCNTFGYAPTTSSYLREQ >Mature_180_residues MNPIAQPSALTSFSPSIKGAVEILNQGLEFLLVISDSDYLTRAKPHVTSSIGEHTRHTLDLFHALILKENATVDYNTRRR GHPVEFDRSIALKEIHYVINWLERLDRRDLEAPIMIQTEVSMDTQVFASLPSTLEREVTFAALHANHHYAMIKVITTFLD VETCNTFGYAPTTSSYLREQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20442; Mature: 20442
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPIAQPSALTSFSPSIKGAVEILNQGLEFLLVISDSDYLTRAKPHVTSSIGEHTRHTLD CCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCHHCCCCHHHHHHHHHHHHHHH LFHALILKENATVDYNTRRRGHPVEFDRSIALKEIHYVINWLERLDRRDLEAPIMIQTEV HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC SMDTQVFASLPSTLEREVTFAALHANHHYAMIKVITTFLDVETCNTFGYAPTTSSYLREQ CCHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCC >Mature Secondary Structure MNPIAQPSALTSFSPSIKGAVEILNQGLEFLLVISDSDYLTRAKPHVTSSIGEHTRHTLD CCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCHHCCCCHHHHHHHHHHHHHHH LFHALILKENATVDYNTRRRGHPVEFDRSIALKEIHYVINWLERLDRRDLEAPIMIQTEV HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC SMDTQVFASLPSTLEREVTFAALHANHHYAMIKVITTFLDVETCNTFGYAPTTSSYLREQ CCHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA