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The map label for this gene is lptC [H]

Identifier: 218710674

GI number: 218710674

Start: 2919169

End: 2919732

Strand: Direct

Name: lptC [H]

Synonym: VS_2754

Alternate gene names: 218710674

Gene position: 2919169-2919732 (Clockwise)

Preceding gene: 218710673

Following gene: 218710675

Centisome position: 88.48

GC content: 41.31

Gene sequence:

>564_bases
ATGAGCTTTAATCGTATTATCTACTTAATACTCATCTTTATTGCCTCTTGGTCGGCCTATTACTTGTACGACAAAGAGCA
AACTTCGACGATACAAGTAGATCCAAACTTGGAACTGCCTGCGTTTAGCGGAAAGAATCTTGATAACATTAGCTATGGCG
AAAGCGGTATTCGTAGCTACCGAGTTGAATCAACTAATCTAGAGCACTACTCGGTCGTTGGCGATACGCACTTTCAAGAC
CCTATTCTTTCAGTATTCCGTGAAGGGCATACGATAGAATGGCGAGTGACCGCTGATCGCGCAATTATGGATGAAAATCA
AGTCATCACTTTTTATGACAATGTTGTGGCGAAAAACCTGTTGCCAGATGCTAGCTTCGATACAATGACTACAGATAAAA
TGGTTGTTGAACTGACTAGCCGAGATTTTTATTCAGACACTCCGGTCCATATGATCGGTACATTTTTTGAAAATGAGGGG
CAAGCAATGAAAGGGAACTTCGGTACCAACAATGCAACTCTCTTTAATTCTGTTCAGGGTAGATATGAAACTCTCACACC
TTAG

Upstream 100 bases:

>100_bases
ATGTAACCACCATTAATGGTGGTTACGGTGCTGTTCGTGAAGTCTGCGACCTTATTTTACAAGCAAGAAGCGAACTCGAC
GTGCACAAAGGTTTAAGCAT

Downstream 100 bases:

>100_bases
TTTATTGGCTTTGACCCTTGCGGCGTCTAATGTCTATGCTCTATCTTCGGATAGCGAGCAGCCTGTCTATATTGATTCAG
ACAGTCAGCAATTAGATATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MSFNRIIYLILIFIASWSAYYLYDKEQTSTIQVDPNLELPAFSGKNLDNISYGESGIRSYRVESTNLEHYSVVGDTHFQD
PILSVFREGHTIEWRVTADRAIMDENQVITFYDNVVAKNLLPDASFDTMTTDKMVVELTSRDFYSDTPVHMIGTFFENEG
QAMKGNFGTNNATLFNSVQGRYETLTP

Sequences:

>Translated_187_residues
MSFNRIIYLILIFIASWSAYYLYDKEQTSTIQVDPNLELPAFSGKNLDNISYGESGIRSYRVESTNLEHYSVVGDTHFQD
PILSVFREGHTIEWRVTADRAIMDENQVITFYDNVVAKNLLPDASFDTMTTDKMVVELTSRDFYSDTPVHMIGTFFENEG
QAMKGNFGTNNATLFNSVQGRYETLTP
>Mature_186_residues
SFNRIIYLILIFIASWSAYYLYDKEQTSTIQVDPNLELPAFSGKNLDNISYGESGIRSYRVESTNLEHYSVVGDTHFQDP
ILSVFREGHTIEWRVTADRAIMDENQVITFYDNVVAKNLLPDASFDTMTTDKMVVELTSRDFYSDTPVHMIGTFFENEGQ
AMKGNFGTNNATLFNSVQGRYETLTP

Specific function: Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG3117

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptC family [H]

Homologues:

Organism=Escherichia coli, GI1789591, Length=183, Percent_Identity=29.5081967213115, Blast_Score=91, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010664 [H]

Pfam domain/function: PF06835 DUF1239 [H]

EC number: NA

Molecular weight: Translated: 21361; Mature: 21230

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFNRIIYLILIFIASWSAYYLYDKEQTSTIQVDPNLELPAFSGKNLDNISYGESGIRSY
CCHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE
RVESTNLEHYSVVGDTHFQDPILSVFREGHTIEWRVTADRAIMDENQVITFYDNVVAKNL
EEECCCCCEEEEECCCCCCCHHHHHHHCCCEEEEEEECCCEEECCCCEEEEEHHHHHHHC
LPDASFDTMTTDKMVVELTSRDFYSDTPVHMIGTFFENEGQAMKGNFGTNNATLFNSVQG
CCCCCCCCCCCCEEEEEEECCCCCCCCCHHEEEEEECCCCCEEECCCCCCCCEEEECCCC
RYETLTP
CEEECCC
>Mature Secondary Structure 
SFNRIIYLILIFIASWSAYYLYDKEQTSTIQVDPNLELPAFSGKNLDNISYGESGIRSY
CHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE
RVESTNLEHYSVVGDTHFQDPILSVFREGHTIEWRVTADRAIMDENQVITFYDNVVAKNL
EEECCCCCEEEEECCCCCCCHHHHHHHCCCEEEEEEECCCEEECCCCEEEEEHHHHHHHC
LPDASFDTMTTDKMVVELTSRDFYSDTPVHMIGTFFENEGQAMKGNFGTNNATLFNSVQG
CCCCCCCCCCCCEEEEEEECCCCCCCCCHHEEEEEECCCCCEEECCCCCCCCEEEECCCC
RYETLTP
CEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]