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The map label for this gene is kdsD [H]

Identifier: 218710672

GI number: 218710672

Start: 2917644

End: 2918615

Strand: Direct

Name: kdsD [H]

Synonym: VS_2752

Alternate gene names: 218710672

Gene position: 2917644-2918615 (Clockwise)

Preceding gene: 218710671

Following gene: 218710673

Centisome position: 88.43

GC content: 44.14

Gene sequence:

>972_bases
ATGTCTCAGCCATTTGATTATTGCAGCGTTGCAAAACAAGTTTTGGAAACTGAAGTTGCAGGTCTCACGCAATTAGACCA
ATATTTTAATGATGATTTTAGCAAAGCTTGCGACCTAATCCTGAACAACAAAGGCAAAGTCGTAGTAATGGGCATGGGCA
AATCAGGCCACATTGGTAACAAAATAGCAGCTACACTGGCAAGTACTGGTACATCGGCTTTCTTTGTACACCCAGGTGAA
GCGGCGCATGGTGATTTAGGTATGATCGAACCTGGCGATATTGTGATAGCAATATCCAACTCAGGTGAATCAGGAGAAAT
CCTCAGCCTATTCCCAGTATTAAAGCGTTTAAACATTAAGATTATCAGCATGACTGGCAAGCCGGCATCAAACATGGCGA
CTTTATCTGATATTCATTTACAGATTTCAGTACCCGAAGAAGCGTGTCCCCTAGGTTTAGCACCAACAACCAGTACTACC
GCTACTTTGGTTATGGGTGATGCATTAGCCGTTGCACTTTTACAGGCAAGAGGTTTTACCGCTCAAGATTTTGCACTGTC
TCATCCTGGTGGTGCTTTGGGCCGTCAACTGCTGTTGAAACTAGACGACATCATGCACACCGGCGATTCACTCCCAATTG
TGGCTCCGGATGCACTAGTTCGAGATGCCCTGTTAGAGATATCTCAAAAAGGCTTGGGGATGACGGCAATCGTCGGTGAA
GATGGCCAAATGAAGGGCATTTTTACCGATGGTGATTTACGCCGTATCTTAGATAAACGTATTGATATTCATAGCACGCA
GATCGGCGATGTAATGACACTGAACCCAACGGTAGCAGAACCAAACATGCTCGCAGTTGAGGGCTTAAATTTGATGCAAG
CTAAGAGCATCAATGGCTTGATGTTGTGTGATAGTGGCAAATTAGTAGGCGCTTTAAATATGCATGACTTACTGAAAGCA
GGAGTAATGTAA

Upstream 100 bases:

>100_bases
GGCGGCGTGTTAATCGTGACGTTTGTGGCATATCAAAGTTACCTACTAATGAACATGTCAGCTTAATTGTTGATTTAACT
TCCCGTACTTGGAGTATTTG

Downstream 100 bases:

>100_bases
TGTCACAAACAGTCGAAACTCTATACGGCACGGTAGATTCAGAAGTGTTTGCCGTAGCAAAAGAGATCAAATTGCTTATT
TGCGATGTCGATGGCGTGTT

Product: arabinose 5-phosphate isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MSQPFDYCSVAKQVLETEVAGLTQLDQYFNDDFSKACDLILNNKGKVVVMGMGKSGHIGNKIAATLASTGTSAFFVHPGE
AAHGDLGMIEPGDIVIAISNSGESGEILSLFPVLKRLNIKIISMTGKPASNMATLSDIHLQISVPEEACPLGLAPTTSTT
ATLVMGDALAVALLQARGFTAQDFALSHPGGALGRQLLLKLDDIMHTGDSLPIVAPDALVRDALLEISQKGLGMTAIVGE
DGQMKGIFTDGDLRRILDKRIDIHSTQIGDVMTLNPTVAEPNMLAVEGLNLMQAKSINGLMLCDSGKLVGALNMHDLLKA
GVM

Sequences:

>Translated_323_residues
MSQPFDYCSVAKQVLETEVAGLTQLDQYFNDDFSKACDLILNNKGKVVVMGMGKSGHIGNKIAATLASTGTSAFFVHPGE
AAHGDLGMIEPGDIVIAISNSGESGEILSLFPVLKRLNIKIISMTGKPASNMATLSDIHLQISVPEEACPLGLAPTTSTT
ATLVMGDALAVALLQARGFTAQDFALSHPGGALGRQLLLKLDDIMHTGDSLPIVAPDALVRDALLEISQKGLGMTAIVGE
DGQMKGIFTDGDLRRILDKRIDIHSTQIGDVMTLNPTVAEPNMLAVEGLNLMQAKSINGLMLCDSGKLVGALNMHDLLKA
GVM
>Mature_322_residues
SQPFDYCSVAKQVLETEVAGLTQLDQYFNDDFSKACDLILNNKGKVVVMGMGKSGHIGNKIAATLASTGTSAFFVHPGEA
AHGDLGMIEPGDIVIAISNSGESGEILSLFPVLKRLNIKIISMTGKPASNMATLSDIHLQISVPEEACPLGLAPTTSTTA
TLVMGDALAVALLQARGFTAQDFALSHPGGALGRQLLLKLDDIMHTGDSLPIVAPDALVRDALLEISQKGLGMTAIVGED
GQMKGIFTDGDLRRILDKRIDIHSTQIGDVMTLNPTVAEPNMLAVEGLNLMQAKSINGLMLCDSGKLVGALNMHDLLKAG
VM

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=322, Percent_Identity=62.4223602484472, Blast_Score=411, Evalue=1e-116,
Organism=Escherichia coli, GI87082151, Length=313, Percent_Identity=47.6038338658147, Blast_Score=278, Evalue=4e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 33962; Mature: 33831

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQPFDYCSVAKQVLETEVAGLTQLDQYFNDDFSKACDLILNNKGKVVVMGMGKSGHIGN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEECCCCCEEEEECCCCCCCCH
KIAATLASTGTSAFFVHPGEAAHGDLGMIEPGDIVIAISNSGESGEILSLFPVLKRLNIK
HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCEE
IISMTGKPASNMATLSDIHLQISVPEEACPLGLAPTTSTTATLVMGDALAVALLQARGFT
EEEECCCCCCCCEEEEEEEEEEECCHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCC
AQDFALSHPGGALGRQLLLKLDDIMHTGDSLPIVAPDALVRDALLEISQKGLGMTAIVGE
HHCCEECCCCHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHCCCCEEEEECC
DGQMKGIFTDGDLRRILDKRIDIHSTQIGDVMTLNPTVAEPNMLAVEGLNLMQAKSINGL
CCCEEEEEECHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEECCCCEEECCCCCEE
MLCDSGKLVGALNMHDLLKAGVM
EEECCCCEEEECCHHHHHHHCCC
>Mature Secondary Structure 
SQPFDYCSVAKQVLETEVAGLTQLDQYFNDDFSKACDLILNNKGKVVVMGMGKSGHIGN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHEECCCCCEEEEECCCCCCCCH
KIAATLASTGTSAFFVHPGEAAHGDLGMIEPGDIVIAISNSGESGEILSLFPVLKRLNIK
HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCEE
IISMTGKPASNMATLSDIHLQISVPEEACPLGLAPTTSTTATLVMGDALAVALLQARGFT
EEEECCCCCCCCEEEEEEEEEEECCHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCC
AQDFALSHPGGALGRQLLLKLDDIMHTGDSLPIVAPDALVRDALLEISQKGLGMTAIVGE
HHCCEECCCCHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHCCCCEEEEECC
DGQMKGIFTDGDLRRILDKRIDIHSTQIGDVMTLNPTVAEPNMLAVEGLNLMQAKSINGL
CCCEEEEEECHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEECCCCEEECCCCCEE
MLCDSGKLVGALNMHDLLKAGVM
EEECCCCEEEECCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]