| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218710656
Identifier: 218710656
GI number: 218710656
Start: 2904264
End: 2905061
Strand: Reverse
Name: 218710656
Synonym: VS_2736
Alternate gene names: NA
Gene position: 2905061-2904264 (Counterclockwise)
Preceding gene: 218710657
Following gene: 218710648
Centisome position: 88.05
GC content: 45.99
Gene sequence:
>798_bases ATGCGGCTACCTCTCGATGGTCTTTGGCAAATTTCGCCACTGACGGATCTCTCTATCCCACAAGATGACATTACCTTTCC TGCTCCATTAAGCTCAAAGCTCCCTAATAGCTTGAGTGAAGAGGAAATCGCAGAGCAAGAATGGCACCTGATGCATGACA TCGAAGTGGATGATGCCATGTTGGCATGCCCATTTGTTGAGCTAGTCGTCGCAGGCGTTGACTACTTTGCAGAAGTGCGA CTCAATGGCGTTGCCGTGTTTGACTGTGATGGCAGCGAAGCCGAATATCGCAAGGACATTCGTCCTTATATGCAGCCTGG TCGAAATCGTTTTGAGATCCTTTTCCTTGAAGAAGAGGAGAGCCTGTTGCTTGAAGAGGATATGGATGACTCTATCTCTT CACAGGTCGTCGCTAAATCAGATTCTCGTATCGGAATCTGGCAAGCTCCATATCTTCAGTTCGTTCGTAACGTCAAGCTT GAGCAAGTTGTCACCGAGCAAATCTGGCATCACGGTGGTGGGTGTGAGTTTAAAGTAGATGTTATCTATCAAACGCTAAA GCCGGGATTAATATCTGCATCAATCAAGTTTAATGGTATGACTCTCGTGATGCCGATTGATGTGCGAGCAGAACATACGG GTGTTGTGTTTCAGGTTGAGGCTCCACTGGTATTTAACCTTGAGAAGCCCAATCCTAAGCATTTATATCAGTTAGAAGTG GAACTCGATGGGCAAAAAGAGAGTTCTTTCGTAGCCTTGAATCCAGCCTCTTGCGTGAGTAATTTTTTGCGTAACTAG
Upstream 100 bases:
>100_bases AGCCTTGAGCTGGCATTTTTTTGTCCTCAGAAAAATAAATGTCTTTATATGCATTCATTCATTATAATGCGGTCAAAATT GATCTAGCTCAAGGAATGAC
Downstream 100 bases:
>100_bases CGGTTATTCGATTAGCCCTTTACGCAATAAATTAATTTGTTCACTCGTTTGTCATCTAATGAACTGCCGACGCTCACCCT ATTTCAAAAACACATTATAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 265; Mature: 265
Protein sequence:
>265_residues MRLPLDGLWQISPLTDLSIPQDDITFPAPLSSKLPNSLSEEEIAEQEWHLMHDIEVDDAMLACPFVELVVAGVDYFAEVR LNGVAVFDCDGSEAEYRKDIRPYMQPGRNRFEILFLEEEESLLLEEDMDDSISSQVVAKSDSRIGIWQAPYLQFVRNVKL EQVVTEQIWHHGGGCEFKVDVIYQTLKPGLISASIKFNGMTLVMPIDVRAEHTGVVFQVEAPLVFNLEKPNPKHLYQLEV ELDGQKESSFVALNPASCVSNFLRN
Sequences:
>Translated_265_residues MRLPLDGLWQISPLTDLSIPQDDITFPAPLSSKLPNSLSEEEIAEQEWHLMHDIEVDDAMLACPFVELVVAGVDYFAEVR LNGVAVFDCDGSEAEYRKDIRPYMQPGRNRFEILFLEEEESLLLEEDMDDSISSQVVAKSDSRIGIWQAPYLQFVRNVKL EQVVTEQIWHHGGGCEFKVDVIYQTLKPGLISASIKFNGMTLVMPIDVRAEHTGVVFQVEAPLVFNLEKPNPKHLYQLEV ELDGQKESSFVALNPASCVSNFLRN >Mature_265_residues MRLPLDGLWQISPLTDLSIPQDDITFPAPLSSKLPNSLSEEEIAEQEWHLMHDIEVDDAMLACPFVELVVAGVDYFAEVR LNGVAVFDCDGSEAEYRKDIRPYMQPGRNRFEILFLEEEESLLLEEDMDDSISSQVVAKSDSRIGIWQAPYLQFVRNVKL EQVVTEQIWHHGGGCEFKVDVIYQTLKPGLISASIKFNGMTLVMPIDVRAEHTGVVFQVEAPLVFNLEKPNPKHLYQLEV ELDGQKESSFVALNPASCVSNFLRN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29968; Mature: 29968
Theoretical pI: Translated: 4.19; Mature: 4.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLPLDGLWQISPLTDLSIPQDDITFPAPLSSKLPNSLSEEEIAEQEWHLMHDIEVDDAM CCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHEEECCCCCCHH LACPFVELVVAGVDYFAEVRLNGVAVFDCDGSEAEYRKDIRPYMQPGRNRFEILFLEEEE HHHHHHHHHHHHHHHEEEEEECCEEEEECCCCHHHHHHHCCHHHCCCCCEEEEEEEECCC SLLLEEDMDDSISSQVVAKSDSRIGIWQAPYLQFVRNVKLEQVVTEQIWHHGGGCEFKVD CEEECCCCCCHHHHHEEECCCCCEEEECCHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEE VIYQTLKPGLISASIKFNGMTLVMPIDVRAEHTGVVFQVEAPLVFNLEKPNPKHLYQLEV EEEHHHCCCEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCEEEEECCCCCCEEEEEEE ELDGQKESSFVALNPASCVSNFLRN EECCCCCCCEEEECHHHHHHHHHCC >Mature Secondary Structure MRLPLDGLWQISPLTDLSIPQDDITFPAPLSSKLPNSLSEEEIAEQEWHLMHDIEVDDAM CCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHEEECCCCCCHH LACPFVELVVAGVDYFAEVRLNGVAVFDCDGSEAEYRKDIRPYMQPGRNRFEILFLEEEE HHHHHHHHHHHHHHHEEEEEECCEEEEECCCCHHHHHHHCCHHHCCCCCEEEEEEEECCC SLLLEEDMDDSISSQVVAKSDSRIGIWQAPYLQFVRNVKLEQVVTEQIWHHGGGCEFKVD CEEECCCCCCHHHHHEEECCCCCEEEECCHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEE VIYQTLKPGLISASIKFNGMTLVMPIDVRAEHTGVVFQVEAPLVFNLEKPNPKHLYQLEV EEEHHHCCCEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCEEEEECCCCCCEEEEEEE ELDGQKESSFVALNPASCVSNFLRN EECCCCCCCEEEECHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA