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The map label for this gene is lptF [H]

Identifier: 218710648

GI number: 218710648

Start: 2896211

End: 2897317

Strand: Reverse

Name: lptF [H]

Synonym: VS_2728

Alternate gene names: 218710648

Gene position: 2897317-2896211 (Counterclockwise)

Preceding gene: 218710656

Following gene: 218710647

Centisome position: 87.82

GC content: 43.09

Gene sequence:

>1107_bases
TTGAGCGTGATTATTGTTAGATATTTGATCCGAGAGACAATCAAGAGCCAATTTGCGATATTTTTTGTTCTCTTTCTCGT
GTTTCTCAGCCAAAAGTTCATCAGTGTTTTAGCCGACGCCTCTGATGGTGATATTCCAGCAAGCCTTGTATTATCGATCG
TGGGTCTAAATATGCCAGCGATGGGGCTCTTGATGCTTCCACTTAGTATCTATATTGGCATTTTGCTGACTTTTGGCCGC
CTTTATGCCGAAAGTGAGATTGTGGTGATGAATGCTACGGGTATTGGCAATAAATTCCTCATCCAATCAGCACTTTATCT
GGCGTTGATTACTGCAACTGTCGCTGCTTTTAACTCCTTTTGGCTGTCTCCATGGTCACAAGATAAAGTAGAACAAATGT
ATGAGGAAGTGGCTGCAGAGAACAGCGTCGATTTACTACCCAAAGGCAAATTTGCAAGGACTCCCGATGGTTCTTCTGTT
GTGTTTATCGAGGGTATCGATGGTAATCAATTAGACAATGTGTTCGTTTCTCAAATGCGACCTCGTGACTCAGTGCTTCC
TAGTGTGATGTTCTCTAAGTCGGGAGACGTAAAAGAATTGAGCGATGGCCGCCAAGTTATTGTGATGTACGATGGTACTC
GTCATGAAGGAGTGCCTTCTCGCCTTGATTATAGAGTGACGCACTTTGAAGAGTATGAAGGCTTAATTGGTCAGCGTGAA
GTAGAGAAGAAAGGTCGAGAGTGGGAAGCGATTCCAACTATTGATCTTATTGGAAATCAAGATAATCGTGCCAAGGCTGA
ATTGCAGTGGCGCATGTCACTGGTGTTGTGTATCCCATTGTTGACTATGCTCGTTGTACCGCTGTCAGCAGTTAACCCAC
GACAAGGTCGTTTTGCCAAAATAGGTCCGGCAATCCTGATTTATTTGACTTACTTCTTAGCAATCAGTGCAACCAAATCT
TCAATTGAAGAAGGGGACATTCCTGCTGCAATAGGCATGTGGCCAATCAATGCATTATTATTGTTTGTCGCGATTGGTGC
CAACTTTATGGATAGTGTGCCTGTTAGGCGTTTGAAAGAAAAATTCAAGAATAAGAGGTTGGCTTAA

Upstream 100 bases:

>100_bases
TAAAGAAGAACGTTAACACTTAGCTAAAAATTTAAAAAATAAAAGGTTCAACGGGAAATTATAGTGATTCAATCAAAAAA
ACAAGTTTTGTATAGGTAAT

Downstream 100 bases:

>100_bases
GCCGTGTTTAAGATTCTCGATTTATATATAGGCAGAACCATCATCGCGACCACGTCACTGGTATTGGTGACGTTTGTCGG
TCTCTCTGGAATTATCAAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MSVIIVRYLIRETIKSQFAIFFVLFLVFLSQKFISVLADASDGDIPASLVLSIVGLNMPAMGLLMLPLSIYIGILLTFGR
LYAESEIVVMNATGIGNKFLIQSALYLALITATVAAFNSFWLSPWSQDKVEQMYEEVAAENSVDLLPKGKFARTPDGSSV
VFIEGIDGNQLDNVFVSQMRPRDSVLPSVMFSKSGDVKELSDGRQVIVMYDGTRHEGVPSRLDYRVTHFEEYEGLIGQRE
VEKKGREWEAIPTIDLIGNQDNRAKAELQWRMSLVLCIPLLTMLVVPLSAVNPRQGRFAKIGPAILIYLTYFLAISATKS
SIEEGDIPAAIGMWPINALLLFVAIGANFMDSVPVRRLKEKFKNKRLA

Sequences:

>Translated_368_residues
MSVIIVRYLIRETIKSQFAIFFVLFLVFLSQKFISVLADASDGDIPASLVLSIVGLNMPAMGLLMLPLSIYIGILLTFGR
LYAESEIVVMNATGIGNKFLIQSALYLALITATVAAFNSFWLSPWSQDKVEQMYEEVAAENSVDLLPKGKFARTPDGSSV
VFIEGIDGNQLDNVFVSQMRPRDSVLPSVMFSKSGDVKELSDGRQVIVMYDGTRHEGVPSRLDYRVTHFEEYEGLIGQRE
VEKKGREWEAIPTIDLIGNQDNRAKAELQWRMSLVLCIPLLTMLVVPLSAVNPRQGRFAKIGPAILIYLTYFLAISATKS
SIEEGDIPAAIGMWPINALLLFVAIGANFMDSVPVRRLKEKFKNKRLA
>Mature_367_residues
SVIIVRYLIRETIKSQFAIFFVLFLVFLSQKFISVLADASDGDIPASLVLSIVGLNMPAMGLLMLPLSIYIGILLTFGRL
YAESEIVVMNATGIGNKFLIQSALYLALITATVAAFNSFWLSPWSQDKVEQMYEEVAAENSVDLLPKGKFARTPDGSSVV
FIEGIDGNQLDNVFVSQMRPRDSVLPSVMFSKSGDVKELSDGRQVIVMYDGTRHEGVPSRLDYRVTHFEEYEGLIGQREV
EKKGREWEAIPTIDLIGNQDNRAKAELQWRMSLVLCIPLLTMLVVPLSAVNPRQGRFAKIGPAILIYLTYFLAISATKSS
IEEGDIPAAIGMWPINALLLFVAIGANFMDSVPVRRLKEKFKNKRLA

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=363, Percent_Identity=43.5261707988981, Blast_Score=285, Evalue=3e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 40922; Mature: 40791

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVIIVRYLIRETIKSQFAIFFVLFLVFLSQKFISVLADASDGDIPASLVLSIVGLNMPA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCH
MGLLMLPLSIYIGILLTFGRLYAESEIVVMNATGIGNKFLIQSALYLALITATVAAFNSF
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
WLSPWSQDKVEQMYEEVAAENSVDLLPKGKFARTPDGSSVVFIEGIDGNQLDNVFVSQMR
HCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCC
PRDSVLPSVMFSKSGDVKELSDGRQVIVMYDGTRHEGVPSRLDYRVTHFEEYEGLIGQRE
CCHHHHHHHHHCCCCCHHHHCCCCEEEEEECCCCCCCCCCHHCEEHHHHHHHHHHCCHHH
VEKKGREWEAIPTIDLIGNQDNRAKAELQWRMSLVLCIPLLTMLVVPLSAVNPRQGRFAK
HHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
IGPAILIYLTYFLAISATKSSIEEGDIPAAIGMWPINALLLFVAIGANFMDSVPVRRLKE
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCHHHHHH
KFKNKRLA
HHHHCCCC
>Mature Secondary Structure 
SVIIVRYLIRETIKSQFAIFFVLFLVFLSQKFISVLADASDGDIPASLVLSIVGLNMPA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCH
MGLLMLPLSIYIGILLTFGRLYAESEIVVMNATGIGNKFLIQSALYLALITATVAAFNSF
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
WLSPWSQDKVEQMYEEVAAENSVDLLPKGKFARTPDGSSVVFIEGIDGNQLDNVFVSQMR
HCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCC
PRDSVLPSVMFSKSGDVKELSDGRQVIVMYDGTRHEGVPSRLDYRVTHFEEYEGLIGQRE
CCHHHHHHHHHCCCCCHHHHCCCCEEEEEECCCCCCCCCCHHCEEHHHHHHHHHHCCHHH
VEKKGREWEAIPTIDLIGNQDNRAKAELQWRMSLVLCIPLLTMLVVPLSAVNPRQGRFAK
HHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
IGPAILIYLTYFLAISATKSSIEEGDIPAAIGMWPINALLLFVAIGANFMDSVPVRRLKE
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCHHHHHH
KFKNKRLA
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]