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The map label for this gene is yqgF [C]

Identifier: 218710626

GI number: 218710626

Start: 2868462

End: 2868884

Strand: Direct

Name: yqgF [C]

Synonym: VS_2680

Alternate gene names: 218710626

Gene position: 2868462-2868884 (Clockwise)

Preceding gene: 218710625

Following gene: 218710629

Centisome position: 86.94

GC content: 44.21

Gene sequence:

>423_bases
ATGTCACGAACAATTATGGCATTTGACTACGGTACAAAAAGTATCGGCAGTGCGATAGGACAAGAGATCACAGGCACAGC
AAGCCCTTTAAAAGCCTTTAAAGCCAAAGATGGCATCCCAAACTGGGACGATATCGAGAAGCAAATTAAGGAATGGCAAC
CGAATCTGATTGTGGTTGGCCTTCCTACCGACCTTCATGGTAAAGATCTAGCAGCTATTACACCCAGAGCGAAGAAATTC
GCTAACCGTCTTAAAGGACGCTTTGGTGTGGATGTTGAACTGCATGATGAAAGACTTTCTACGACAGAAGCAAGGGCCGA
CCTTTTTGAAATGGGCGGCTATAAAGCGCTAAGTAAAGGTAACGTCGATAATCAATCAGCCGTTGTAATTCTAGAGAGCT
GGTTTGAAGCACAATATGGCTAA

Upstream 100 bases:

>100_bases
GCATCAATGCGGCTCAGCTTTCAGCAGACGCTGGCCACGCATAGTCCGACTCAGCTCAATAAAATAAACACTCTCAAACA
CAGATTAATTTGGAAGCCCC

Downstream 100 bases:

>100_bases
GTTATTTATTTAGCAAACTCGAGCAAGCTTATGATCCCTTGCCATTTTAACTGCGTAATGGAGGAGCGATAAAGGAAAAG
AACTTGGGAGTTCATATGAA

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MSRTIMAFDYGTKSIGSAIGQEITGTASPLKAFKAKDGIPNWDDIEKQIKEWQPNLIVVGLPTDLHGKDLAAITPRAKKF
ANRLKGRFGVDVELHDERLSTTEARADLFEMGGYKALSKGNVDNQSAVVILESWFEAQYG

Sequences:

>Translated_140_residues
MSRTIMAFDYGTKSIGSAIGQEITGTASPLKAFKAKDGIPNWDDIEKQIKEWQPNLIVVGLPTDLHGKDLAAITPRAKKF
ANRLKGRFGVDVELHDERLSTTEARADLFEMGGYKALSKGNVDNQSAVVILESWFEAQYG
>Mature_139_residues
SRTIMAFDYGTKSIGSAIGQEITGTASPLKAFKAKDGIPNWDDIEKQIKEWQPNLIVVGLPTDLHGKDLAAITPRAKKFA
NRLKGRFGVDVELHDERLSTTEARADLFEMGGYKALSKGNVDNQSAVVILESWFEAQYG

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=139, Percent_Identity=64.0287769784173, Blast_Score=189, Evalue=6e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 15415; Mature: 15283

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRTIMAFDYGTKSIGSAIGQEITGTASPLKAFKAKDGIPNWDDIEKQIKEWQPNLIVVG
CCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEE
LPTDLHGKDLAAITPRAKKFANRLKGRFGVDVELHDERLSTTEARADLFEMGGYKALSKG
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHCCEEEECCC
NVDNQSAVVILESWFEAQYG
CCCCCCEEEEEEHHHCCCCC
>Mature Secondary Structure 
SRTIMAFDYGTKSIGSAIGQEITGTASPLKAFKAKDGIPNWDDIEKQIKEWQPNLIVVG
CCEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEE
LPTDLHGKDLAAITPRAKKFANRLKGRFGVDVELHDERLSTTEARADLFEMGGYKALSKG
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHCCEEEECCC
NVDNQSAVVILESWFEAQYG
CCCCCCEEEEEEHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA