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The map label for this gene is ygaD [H]

Identifier: 218710548

GI number: 218710548

Start: 2784887

End: 2785480

Strand: Reverse

Name: ygaD [H]

Synonym: VS_2597

Alternate gene names: 218710548

Gene position: 2785480-2784887 (Counterclockwise)

Preceding gene: 218710550

Following gene: 218710547

Centisome position: 84.43

GC content: 46.63

Gene sequence:

>594_bases
TTGCGGCTTAGGATACGTGAAAGCGTTTCGTGCGAAAAGCGACACATGCGAAAAGATGCGAATCCGAATGATATGACAGT
AGATAAAGGGAAGTTGATGATGCAGATGACTCAAGATCTTAGTGAACAGCTTGGACACTTACTCGCTAAACATAAACACG
TTTTAGTGACGGCTGAATCTTGCACTGGCGGTGGGGTTGCTAGCGCGGTGACGGATATCGCAGGGAGCTCTGGTTGGTTT
GATCGTGCATTTGTTACTTATAGCAATGAAGCGAAGCAAGAGATGATCGGCGTACAGCTTAAAACCTTAGTTGAGTTCGG
TGCGGTGAGTGAGCCTGTCGTAATAGAAATGGCGAGCGGGGCATTGCAACATTCAAATGGGACTATCTCTGTATCGATCA
GTGGTATTGCTGGCCCAGGTGGCGCGACCGAAGATAAGCCTGTTGGAACGGTATGTTTCGCTTGGAAAGCACTAAACGGT
TGGGATAAAGTAGAAACGCATGTATTTACAGGCGACAGATCACAAGTACGCCAACAAGCCACGCACCATGCCCTACAAGT
TATTTATGATTACCTATCAATGGAAGGTAAGTAA

Upstream 100 bases:

>100_bases
CAGAATTTCTGGATTTTCTGCTTTTAGCTTTAGGTACTGCTGCATCATGGGAGTATGTTTTTGATCGGCTTTCACAGTTA
ACTTCTTTCGTTTATTTCTA

Downstream 100 bases:

>100_bases
CATTTGTACAAATTATTTTCATACAGGTATAGACACTGTATGAATCAACAGTATAATAAAAGCCAATTAGTCACCCCTAT
GTGGGTTAGAAATAGATTCT

Product: competence-damaged protein CinA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MRLRIRESVSCEKRHMRKDANPNDMTVDKGKLMMQMTQDLSEQLGHLLAKHKHVLVTAESCTGGGVASAVTDIAGSSGWF
DRAFVTYSNEAKQEMIGVQLKTLVEFGAVSEPVVIEMASGALQHSNGTISVSISGIAGPGGATEDKPVGTVCFAWKALNG
WDKVETHVFTGDRSQVRQQATHHALQVIYDYLSMEGK

Sequences:

>Translated_197_residues
MRLRIRESVSCEKRHMRKDANPNDMTVDKGKLMMQMTQDLSEQLGHLLAKHKHVLVTAESCTGGGVASAVTDIAGSSGWF
DRAFVTYSNEAKQEMIGVQLKTLVEFGAVSEPVVIEMASGALQHSNGTISVSISGIAGPGGATEDKPVGTVCFAWKALNG
WDKVETHVFTGDRSQVRQQATHHALQVIYDYLSMEGK
>Mature_197_residues
MRLRIRESVSCEKRHMRKDANPNDMTVDKGKLMMQMTQDLSEQLGHLLAKHKHVLVTAESCTGGGVASAVTDIAGSSGWF
DRAFVTYSNEAKQEMIGVQLKTLVEFGAVSEPVVIEMASGALQHSNGTISVSISGIAGPGGATEDKPVGTVCFAWKALNG
WDKVETHVFTGDRSQVRQQATHHALQVIYDYLSMEGK

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=150, Percent_Identity=58, Blast_Score=174, Evalue=5e-45,
Organism=Escherichia coli, GI1787818, Length=152, Percent_Identity=34.2105263157895, Blast_Score=95, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136 [H]

Pfam domain/function: PF02464 CinA [H]

EC number: NA

Molecular weight: Translated: 21378; Mature: 21378

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLRIRESVSCEKRHMRKDANPNDMTVDKGKLMMQMTQDLSEQLGHLLAKHKHVLVTAES
CCEECCCCCCHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECC
CTGGGVASAVTDIAGSSGWFDRAFVTYSNEAKQEMIGVQLKTLVEFGAVSEPVVIEMASG
CCCCCHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC
ALQHSNGTISVSISGIAGPGGATEDKPVGTVCFAWKALNGWDKVETHVFTGDRSQVRQQA
CEECCCCEEEEEEECEECCCCCCCCCCCCHHEEEEHHCCCCCHHEEEEEECCHHHHHHHH
THHALQVIYDYLSMEGK
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRLRIRESVSCEKRHMRKDANPNDMTVDKGKLMMQMTQDLSEQLGHLLAKHKHVLVTAES
CCEECCCCCCHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECC
CTGGGVASAVTDIAGSSGWFDRAFVTYSNEAKQEMIGVQLKTLVEFGAVSEPVVIEMASG
CCCCCHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC
ALQHSNGTISVSISGIAGPGGATEDKPVGTVCFAWKALNGWDKVETHVFTGDRSQVRQQA
CEECCCCEEEEEEECEECCCCCCCCCCCCHHEEEEHHCCCCCHHEEEEEECCHHHHHHHH
THHALQVIYDYLSMEGK
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]