Click here to switch to the map view.

The map label for this gene is yfjD [H]

Identifier: 218710522

GI number: 218710522

Start: 2750553

End: 2751824

Strand: Direct

Name: yfjD [H]

Synonym: VS_2561

Alternate gene names: 218710522

Gene position: 2750553-2751824 (Clockwise)

Preceding gene: 218710521

Following gene: 218710541

Centisome position: 83.37

GC content: 45.36

Gene sequence:

>1272_bases
TTGGACGACATATCAACGGGTATCTTATTTGCGCTACTCGCGTGTCTCATTGTAATTTCTGGTTATTTCTCTGGTTCCGA
AACGGGCATGATGTCCTTGAACCGCTACCGTTTAAAGCACTTGGCCAATACGGGTCATAAAGGTGCCAAACGCGTAGAAA
AACTTCTAAGTCGCCCAGACAGATTGATTGGCCTTATTCTCATCGGCAACAATCTCGTCAATATTCTTGCATCCGCGATC
GCGACTATTCTTGGTATGCGTATCTACGGAGATATCGGCGTTGCAATCGCAACCGGAGCCCTGACCCTAGTGATCCTCGT
GTTTGCTGAGGTTACACCAAAAACGATCGCTTCTCTTTTCCCTGAACGAGTTTCTTACGCCAGCAGTATTCTATTAATAA
TACTGATGAAGGTGCTATCTCCATTGGTTATCTTGGTCAACTTTATTACCAATGGCTTCATTCGTATCTTAGGCGTTAAA
GCTAACCATGATGCAACCGATCATCTAAGCTCAGAAGAACTCAGAACCGTAGTAAATGAAGCGGGTAGCCTAATACCACA
GCGTCACCAAGATATGTTGGTGTCTATTCTCGATTTAGAACACGTCACCGTGAATGACATAATGGTGCCACGTAACGAGA
TCACCGGCATCGACATCAATGATGATTGGAAATCGATCGTGCGTCAGCTCACTCATTCACCTCATGGTCGCATCGTGTTG
TACCGTGATCAGATAGATGAAGTGGTTGGCATGCTGAGGTTACGTGAAGCTTATCGCTTGATGCTCGAAAAGAACGAATT
CAATAAAGAGACCCTGCTGCGTGCTGCAGATGAGATCTACTTTATTCCGGAAGCGACACCGCTTAACACCCAACTGCTTA
AATTCCAACGCAACAAACAACGTATCGGTTTGATTGTTGATGAGTATGGCGATATTAACGGTTTGGTTACCCTCGAAGAT
ATTCTCGAAGAGATCGTGGGCGAATTTACGACTTCAATCGCACCAAGTTTATCTGAAGAGATCACACCGCAAAGCGATGG
TAGCTTCTTGATTGAAGGCAGCGCTAATATCCGAGATATCAACAAAGGTTTGCAGTGGGCACTGCCTACCGATGGACCAA
GAACACTTAATGGTTTGATACTGGAGCATCTTGAAGATATTCCAGAGAGTCACCTGAGTGTTCAGGTTGCCAGCCATCCA
ATGGAAATTGTTGAGCTCGAAGAGAATCGCATCAAGCTGGTGCGTGTGTTTCCGCAGATCGTAAACGGATAG

Upstream 100 bases:

>100_bases
CACCTTGCCTTTAAAATATTGAGTACGATACATTCAATTGACATCTCGACCATGTTCGGTCATAAATTAATCAAGATACA
CAAAAAGGAAAAGAATAGTT

Downstream 100 bases:

>100_bases
AGGCGACTCATTATATGAGAGTAACCCACTGAGTTACCAACTAAGTCCTTCTACAACAAAAGGCCCGGTTCATTGAACCG
GGCCTTTTAGTATCTAACTC

Product: putative Mg2+ and Co2+ transporter CorB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MDDISTGILFALLACLIVISGYFSGSETGMMSLNRYRLKHLANTGHKGAKRVEKLLSRPDRLIGLILIGNNLVNILASAI
ATILGMRIYGDIGVAIATGALTLVILVFAEVTPKTIASLFPERVSYASSILLIILMKVLSPLVILVNFITNGFIRILGVK
ANHDATDHLSSEELRTVVNEAGSLIPQRHQDMLVSILDLEHVTVNDIMVPRNEITGIDINDDWKSIVRQLTHSPHGRIVL
YRDQIDEVVGMLRLREAYRLMLEKNEFNKETLLRAADEIYFIPEATPLNTQLLKFQRNKQRIGLIVDEYGDINGLVTLED
ILEEIVGEFTTSIAPSLSEEITPQSDGSFLIEGSANIRDINKGLQWALPTDGPRTLNGLILEHLEDIPESHLSVQVASHP
MEIVELEENRIKLVRVFPQIVNG

Sequences:

>Translated_423_residues
MDDISTGILFALLACLIVISGYFSGSETGMMSLNRYRLKHLANTGHKGAKRVEKLLSRPDRLIGLILIGNNLVNILASAI
ATILGMRIYGDIGVAIATGALTLVILVFAEVTPKTIASLFPERVSYASSILLIILMKVLSPLVILVNFITNGFIRILGVK
ANHDATDHLSSEELRTVVNEAGSLIPQRHQDMLVSILDLEHVTVNDIMVPRNEITGIDINDDWKSIVRQLTHSPHGRIVL
YRDQIDEVVGMLRLREAYRLMLEKNEFNKETLLRAADEIYFIPEATPLNTQLLKFQRNKQRIGLIVDEYGDINGLVTLED
ILEEIVGEFTTSIAPSLSEEITPQSDGSFLIEGSANIRDINKGLQWALPTDGPRTLNGLILEHLEDIPESHLSVQVASHP
MEIVELEENRIKLVRVFPQIVNG
>Mature_423_residues
MDDISTGILFALLACLIVISGYFSGSETGMMSLNRYRLKHLANTGHKGAKRVEKLLSRPDRLIGLILIGNNLVNILASAI
ATILGMRIYGDIGVAIATGALTLVILVFAEVTPKTIASLFPERVSYASSILLIILMKVLSPLVILVNFITNGFIRILGVK
ANHDATDHLSSEELRTVVNEAGSLIPQRHQDMLVSILDLEHVTVNDIMVPRNEITGIDINDDWKSIVRQLTHSPHGRIVL
YRDQIDEVVGMLRLREAYRLMLEKNEFNKETLLRAADEIYFIPEATPLNTQLLKFQRNKQRIGLIVDEYGDINGLVTLED
ILEEIVGEFTTSIAPSLSEEITPQSDGSFLIEGSANIRDINKGLQWALPTDGPRTLNGLILEHLEDIPESHLSVQVASHP
MEIVELEENRIKLVRVFPQIVNG

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=410, Percent_Identity=24.6341463414634, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI40068053, Length=340, Percent_Identity=25.8823529411765, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI40068055, Length=340, Percent_Identity=25.8823529411765, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI94681046, Length=334, Percent_Identity=23.9520958083832, Blast_Score=70, Evalue=5e-12,
Organism=Escherichia coli, GI145693175, Length=398, Percent_Identity=65.0753768844221, Blast_Score=556, Evalue=1e-159,
Organism=Escherichia coli, GI1790664, Length=418, Percent_Identity=25.3588516746411, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI87082033, Length=238, Percent_Identity=28.1512605042017, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1786879, Length=248, Percent_Identity=24.5967741935484, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1788119, Length=270, Percent_Identity=26.2962962962963, Blast_Score=79, Evalue=6e-16,
Organism=Saccharomyces cerevisiae, GI6324512, Length=346, Percent_Identity=22.8323699421965, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 46985; Mature: 46985

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDISTGILFALLACLIVISGYFSGSETGMMSLNRYRLKHLANTGHKGAKRVEKLLSRPD
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
RLIGLILIGNNLVNILASAIATILGMRIYGDIGVAIATGALTLVILVFAEVTPKTIASLF
CEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
PERVSYASSILLIILMKVLSPLVILVNFITNGFIRILGVKANHDATDHLSSEELRTVVNE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHCCCHHHHHHHHHH
AGSLIPQRHQDMLVSILDLEHVTVNDIMVPRNEITGIDINDDWKSIVRQLTHSPHGRIVL
HHCCCCHHHHHHHHHHHHHCCEEECCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEE
YRDQIDEVVGMLRLREAYRLMLEKNEFNKETLLRAADEIYFIPEATPLNTQLLKFQRNKQ
EHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCEEECCCCCCCHHHHHHHHHCCC
RIGLIVDEYGDINGLVTLEDILEEIVGEFTTSIAPSLSEEITPQSDGSFLIEGSANIRDI
CEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCEEEECCCCHHHH
NKGLQWALPTDGPRTLNGLILEHLEDIPESHLSVQVASHPMEIVELEENRIKLVRVFPQI
CCCCEECCCCCCCHHHHHHHHHHHHHCCHHHEEEEECCCCCEEEEECCCHHHHHHHHHHH
VNG
HCC
>Mature Secondary Structure
MDDISTGILFALLACLIVISGYFSGSETGMMSLNRYRLKHLANTGHKGAKRVEKLLSRPD
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
RLIGLILIGNNLVNILASAIATILGMRIYGDIGVAIATGALTLVILVFAEVTPKTIASLF
CEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
PERVSYASSILLIILMKVLSPLVILVNFITNGFIRILGVKANHDATDHLSSEELRTVVNE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHCCCHHHHHHHHHH
AGSLIPQRHQDMLVSILDLEHVTVNDIMVPRNEITGIDINDDWKSIVRQLTHSPHGRIVL
HHCCCCHHHHHHHHHHHHHCCEEECCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEE
YRDQIDEVVGMLRLREAYRLMLEKNEFNKETLLRAADEIYFIPEATPLNTQLLKFQRNKQ
EHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCEEECCCCCCCHHHHHHHHHCCC
RIGLIVDEYGDINGLVTLEDILEEIVGEFTTSIAPSLSEEITPQSDGSFLIEGSANIRDI
CEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCEEEECCCCHHHH
NKGLQWALPTDGPRTLNGLILEHLEDIPESHLSVQVASHPMEIVELEENRIKLVRVFPQI
CCCCEECCCCCCCHHHHHHHHHHHHHCCHHHEEEEECCCCCEEEEECCCHHHHHHHHHHH
VNG
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 3045760 [H]