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The map label for this gene is ypjD [H]

Identifier: 218710521

GI number: 218710521

Start: 2749631

End: 2750425

Strand: Direct

Name: ypjD [H]

Synonym: VS_2560

Alternate gene names: 218710521

Gene position: 2749631-2750425 (Clockwise)

Preceding gene: 218710515

Following gene: 218710522

Centisome position: 83.34

GC content: 41.76

Gene sequence:

>795_bases
ATGGACAGTCTTATTGCGATCGCAGCAGCCTTTCTTTATACAATGGCGATTTTCACGATCATTCCAGGTCTCGTGCACCA
AACAGGAATCCGTGTAAAAACGGTGTTTATCAGCGCATTACTTGCTTTAGCTTTCCATGCTTGGTTGCTTGGCGATTTAA
TCTTTAATGCCAGTGGTCAAAACCTCAGTATCTTAAACGTTGCTTCTTTAATCAGTTTAATCATATCTGTGGTCATGAGC
GGTGCTATGCTCAAAACACGTTTGTGGTTCATCTTACCTGTTGTTTATAGCTTCGCTGCTCTAAATCTAATGGCTGCCAC
TTTTCTTCCTAGCACCTTCATCAAACACTTAGAGAATGACCCAAAGCTGCTTGTGCACATCTCTTTGGCTCTGTTCTCAT
ACGCGACACTTACCATCGGTGCGCTATACGCTATGCAACTCGCATGGCTAGATCACAAACTTAAAAAGAAAAAAGCCTTA
GTGATAAACCCTAACCTACCTCCTTTAATGATGGTGGAAAGACAGCTTTTCAAGATCATTTTAATCGGTAATGGTTTGTT
AACAGGTACTTTATTAACTGGACTTATCTTCGTACAAGATATGTTTGCTCAAGGTAAAGCACATAAAGCGGTATTGTCTT
TTATAGCTTGGGTTATCTATTCCATCCTTCTTTGGGGTCACTATCAGAAAGGTTGGCGTGGGCAAAAAGTCACATGGTTT
GCCCTTGCGGGTGCCACCATGCTCACATTAGCTTACTTCGGTAGCCGCTTCGTTCAGGAAATAATCCTGAATTAG

Upstream 100 bases:

>100_bases
TGTGAGACATTATTCACTTGGAATTGAATGAGGTTCACCATAGCCCCAAAGAGCGATGCGAGGTATAATTCGCCAATTAG
TAATCATTTAAATGGATACC

Downstream 100 bases:

>100_bases
TATGTATAATGAAGGCAAGGTTTCACACACCTTGCCTTTAAAATATTGAGTACGATACATTCAATTGACATCTCGACCAT
GTTCGGTCATAAATTAATCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MDSLIAIAAAFLYTMAIFTIIPGLVHQTGIRVKTVFISALLALAFHAWLLGDLIFNASGQNLSILNVASLISLIISVVMS
GAMLKTRLWFILPVVYSFAALNLMAATFLPSTFIKHLENDPKLLVHISLALFSYATLTIGALYAMQLAWLDHKLKKKKAL
VINPNLPPLMMVERQLFKIILIGNGLLTGTLLTGLIFVQDMFAQGKAHKAVLSFIAWVIYSILLWGHYQKGWRGQKVTWF
ALAGATMLTLAYFGSRFVQEIILN

Sequences:

>Translated_264_residues
MDSLIAIAAAFLYTMAIFTIIPGLVHQTGIRVKTVFISALLALAFHAWLLGDLIFNASGQNLSILNVASLISLIISVVMS
GAMLKTRLWFILPVVYSFAALNLMAATFLPSTFIKHLENDPKLLVHISLALFSYATLTIGALYAMQLAWLDHKLKKKKAL
VINPNLPPLMMVERQLFKIILIGNGLLTGTLLTGLIFVQDMFAQGKAHKAVLSFIAWVIYSILLWGHYQKGWRGQKVTWF
ALAGATMLTLAYFGSRFVQEIILN
>Mature_264_residues
MDSLIAIAAAFLYTMAIFTIIPGLVHQTGIRVKTVFISALLALAFHAWLLGDLIFNASGQNLSILNVASLISLIISVVMS
GAMLKTRLWFILPVVYSFAALNLMAATFLPSTFIKHLENDPKLLVHISLALFSYATLTIGALYAMQLAWLDHKLKKKKAL
VINPNLPPLMMVERQLFKIILIGNGLLTGTLLTGLIFVQDMFAQGKAHKAVLSFIAWVIYSILLWGHYQKGWRGQKVTWF
ALAGATMLTLAYFGSRFVQEIILN

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=259, Percent_Identity=52.1235521235521, Blast_Score=248, Evalue=4e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 29238; Mature: 29238

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSLIAIAAAFLYTMAIFTIIPGLVHQTGIRVKTVFISALLALAFHAWLLGDLIFNASGQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NLSILNVASLISLIISVVMSGAMLKTRLWFILPVVYSFAALNLMAATFLPSTFIKHLEND
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PKLLVHISLALFSYATLTIGALYAMQLAWLDHKLKKKKALVINPNLPPLMMVERQLFKII
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHH
LIGNGLLTGTLLTGLIFVQDMFAQGKAHKAVLSFIAWVIYSILLWGHYQKGWRGQKVTWF
HCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEH
ALAGATMLTLAYFGSRFVQEIILN
HHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDSLIAIAAAFLYTMAIFTIIPGLVHQTGIRVKTVFISALLALAFHAWLLGDLIFNASGQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NLSILNVASLISLIISVVMSGAMLKTRLWFILPVVYSFAALNLMAATFLPSTFIKHLEND
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PKLLVHISLALFSYATLTIGALYAMQLAWLDHKLKKKKALVINPNLPPLMMVERQLFKII
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHH
LIGNGLLTGTLLTGLIFVQDMFAQGKAHKAVLSFIAWVIYSILLWGHYQKGWRGQKVTWF
HCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEH
ALAGATMLTLAYFGSRFVQEIILN
HHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]