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The map label for this gene is ylbK [H]

Identifier: 218710484

GI number: 218710484

Start: 2710122

End: 2712461

Strand: Reverse

Name: ylbK [H]

Synonym: VS_2523

Alternate gene names: 218710484

Gene position: 2712461-2710122 (Counterclockwise)

Preceding gene: 218710485

Following gene: 218710483

Centisome position: 82.21

GC content: 43.55

Gene sequence:

>2340_bases
ATGATTTCTCGTTGGTTAGTGAGTAGCTTGGGTATTGTCGGTACTGTGATCAGTTTTCAACTGTTTGCCGCTACTGCAGC
ACAGGTTGATTCATCAGAACATGTTGAACTTAAACAAGCTCATAAAAGGCCAACCGTTGCTGTCGTTCTTGCTGGTGGTG
GGGCAAAAGGTGCAGCTCACATCGGTGTGCTTAAAGCCCTAGAAGAGATGCAAATTCCGGTTGATTACATTACCGGTACC
AGCATGGGCGCATACGTTGGTGGTCTTTATGCGACAGGGATGAGCGCTGATGAGATCGAGAGCTTTATTTATACGGTTGA
TTGGAATCGTGGTTATCGCGATCGCGTTAACCGTAGTGATCGCCGTGTGCGAGACAAAGAATATGAAGACCGTTATCAAC
TGAATACCGATCTCGGTTTAGGTTGGGGCGAAATCAAAGCCAGAAAAGGTGTGGTTCAAGGTCAGAATATGTTGCGTATT
CTGCGCGAGACCACTGGTAATTTATCTCCCCTCGATTCTTTCGACAGCCTCGCTATTCCATATCGCTCTGTCGCAACCGA
TATTATCGACCTTGAAGAAGTCGTGATCGATCATGGTCACCTTGTTGATGCGATGATGGCGAGTATGTCAGTACCTGGAG
CACTTCCTCCTTATGAAGTTGATGGGCGAATGTTGGTCGATGGTGGTGTCACCAATAACATGCCTGTTGATGTTGCTAGA
GCGATGGGTGCTGACATAGTTATTGCGATTGATATCAGTACTAACTACAAAAGCAAAGAAGACTTCACTAACTTTTTAGC
CGCAGCAGACCAACTCTCTAATTACCTTGTTCAACGCAGCACTCAAGAGCAAGCCGCGACGTTAACAGACGATGATTTTT
TCCTACGTCCTGATGTTGGGCAAATGGAGACCACCGAGTTCGATAAAATGCCGACGGCTTATCATGCTGGATACGAAGCA
ACAAGGCAGTATACGGATCAGCTTTCTAAGTTGGCGCTCTCTAACGCAGACTATCAAAAGTATATTGACCAGAAACAGCA
AGCTCGAAAGCAGCTAAAACATGGCGACCAGACTGTCGTTGATAGAGTTATTATTAACAACAACACCCACTATTCAGATA
AGTTAATCGAAAATCGTTTAAACCTCGATTCTGGTCAGGTTATTAAAACCAGTGAAATCGAATCTAAAGTGAAAGATCTT
TATGCCTTAGATCGGTTCGAGTTGGTTACTTATGAATTTGAAAATGTTGATGGTGAGGATCAACTGCTGGTCGATGTGAA
CGAAAAATCTTGGGGTCCAAACTACCTCAATTTTCGATTCTTTCTTGAAGATGATTTCTCTACAACCAGCCAGTACTCGC
TCGGTGTCTCTGCCAACTTTACCGATATTAATAAGCATGGTGCAGAGCTAAGAACTAATATCGAGATGGGAACGGACAAA
CGCATTGAGGCGGAACTCTTCTCACCATTCTTTTCGAGTCAAAAGTTGTTCACATCTGTGTCTATTGCTTACAGCAACCA
GAATCGAAACCTGCCAGCAGGAATCGGCGAGATTGGAGAACCGACACTGGATGCAACCAAAGACTACTTACCAATGTCTT
ATCAAGAGTATCTGAGTGAATTTGCATTGGGCTATCAACCGACATTGTGGCAAGAGCTGAAATTTGGTGCACGTTATACC
GATGGCAGTATTGAGGTGGCATCATTACCTTCACTAGGAAGTGGTGGCTATAAACGTATTGGTGCCTTTGCCAGTTATAG
ATTGGATACTTTGGATAACTTCAGTCTTCCTACCGAAGGTTATTTTGTCGATTTAGAATACCTTATCTCTCATGACGATT
TTGAGAATGAGAGCTCTAATGGTGGTTCAGATTTCTCTTCTGAGAGTGATACAGTCTTTGAACTTTCGGCCAATTTTATG
GCAGCACAAAGCATTGAAAAGCATACTTTAGTCGCAAAGGTTGATTACGGCATCGTAGAAAGTAAAAACTCAGTCTTTCC
GATTGATCCGAAAGAGTTAGGAGGGTTCCTCAATCTATCCGGTATTCCAAGAAATAGTTTGATCGGTCAGAACTTAGCTT
ACACCAGTTTGATCTACCGTTATAAGTGGTTTGAAAATGACTTCGGCCTCTTTGAATCACCGTTCTACGTGGGTGCCTCT
ATTGAACATGGTGGTGTTTGGTCGAACAATGACTTAAAACTGGATGAAGCTCCAATGTATACTGCAGGCTCTGTTTTTGC
GGGTGTCGACTCACCCATCGGGCCGATCATATTAGCTTATGGTCGAACCGAAGATAACTTTGATTCGGTGTATCTGATTG
TCGGTACTTCCTACAAATAA

Upstream 100 bases:

>100_bases
GCATTAAAAAGGGCTGTGAAAGTCAACCAAAACAGTGGCTAAAGAAGCTTTTTCAGTGGTAAAGTCATAACAGAAAAGAA
TGACAAGGATAGTTTAGATA

Downstream 100 bases:

>100_bases
TCATGCGTAGAGTCACCGTTTAACTGCGTAAATAGGCAAAAATAGTGGGACTTTCGTCTTAACTTGCTATGTTGGTCAAA
ATGATAAGATTTTAATTTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 779; Mature: 779

Protein sequence:

>779_residues
MISRWLVSSLGIVGTVISFQLFAATAAQVDSSEHVELKQAHKRPTVAVVLAGGGAKGAAHIGVLKALEEMQIPVDYITGT
SMGAYVGGLYATGMSADEIESFIYTVDWNRGYRDRVNRSDRRVRDKEYEDRYQLNTDLGLGWGEIKARKGVVQGQNMLRI
LRETTGNLSPLDSFDSLAIPYRSVATDIIDLEEVVIDHGHLVDAMMASMSVPGALPPYEVDGRMLVDGGVTNNMPVDVAR
AMGADIVIAIDISTNYKSKEDFTNFLAAADQLSNYLVQRSTQEQAATLTDDDFFLRPDVGQMETTEFDKMPTAYHAGYEA
TRQYTDQLSKLALSNADYQKYIDQKQQARKQLKHGDQTVVDRVIINNNTHYSDKLIENRLNLDSGQVIKTSEIESKVKDL
YALDRFELVTYEFENVDGEDQLLVDVNEKSWGPNYLNFRFFLEDDFSTTSQYSLGVSANFTDINKHGAELRTNIEMGTDK
RIEAELFSPFFSSQKLFTSVSIAYSNQNRNLPAGIGEIGEPTLDATKDYLPMSYQEYLSEFALGYQPTLWQELKFGARYT
DGSIEVASLPSLGSGGYKRIGAFASYRLDTLDNFSLPTEGYFVDLEYLISHDDFENESSNGGSDFSSESDTVFELSANFM
AAQSIEKHTLVAKVDYGIVESKNSVFPIDPKELGGFLNLSGIPRNSLIGQNLAYTSLIYRYKWFENDFGLFESPFYVGAS
IEHGGVWSNNDLKLDEAPMYTAGSVFAGVDSPIGPIILAYGRTEDNFDSVYLIVGTSYK

Sequences:

>Translated_779_residues
MISRWLVSSLGIVGTVISFQLFAATAAQVDSSEHVELKQAHKRPTVAVVLAGGGAKGAAHIGVLKALEEMQIPVDYITGT
SMGAYVGGLYATGMSADEIESFIYTVDWNRGYRDRVNRSDRRVRDKEYEDRYQLNTDLGLGWGEIKARKGVVQGQNMLRI
LRETTGNLSPLDSFDSLAIPYRSVATDIIDLEEVVIDHGHLVDAMMASMSVPGALPPYEVDGRMLVDGGVTNNMPVDVAR
AMGADIVIAIDISTNYKSKEDFTNFLAAADQLSNYLVQRSTQEQAATLTDDDFFLRPDVGQMETTEFDKMPTAYHAGYEA
TRQYTDQLSKLALSNADYQKYIDQKQQARKQLKHGDQTVVDRVIINNNTHYSDKLIENRLNLDSGQVIKTSEIESKVKDL
YALDRFELVTYEFENVDGEDQLLVDVNEKSWGPNYLNFRFFLEDDFSTTSQYSLGVSANFTDINKHGAELRTNIEMGTDK
RIEAELFSPFFSSQKLFTSVSIAYSNQNRNLPAGIGEIGEPTLDATKDYLPMSYQEYLSEFALGYQPTLWQELKFGARYT
DGSIEVASLPSLGSGGYKRIGAFASYRLDTLDNFSLPTEGYFVDLEYLISHDDFENESSNGGSDFSSESDTVFELSANFM
AAQSIEKHTLVAKVDYGIVESKNSVFPIDPKELGGFLNLSGIPRNSLIGQNLAYTSLIYRYKWFENDFGLFESPFYVGAS
IEHGGVWSNNDLKLDEAPMYTAGSVFAGVDSPIGPIILAYGRTEDNFDSVYLIVGTSYK
>Mature_779_residues
MISRWLVSSLGIVGTVISFQLFAATAAQVDSSEHVELKQAHKRPTVAVVLAGGGAKGAAHIGVLKALEEMQIPVDYITGT
SMGAYVGGLYATGMSADEIESFIYTVDWNRGYRDRVNRSDRRVRDKEYEDRYQLNTDLGLGWGEIKARKGVVQGQNMLRI
LRETTGNLSPLDSFDSLAIPYRSVATDIIDLEEVVIDHGHLVDAMMASMSVPGALPPYEVDGRMLVDGGVTNNMPVDVAR
AMGADIVIAIDISTNYKSKEDFTNFLAAADQLSNYLVQRSTQEQAATLTDDDFFLRPDVGQMETTEFDKMPTAYHAGYEA
TRQYTDQLSKLALSNADYQKYIDQKQQARKQLKHGDQTVVDRVIINNNTHYSDKLIENRLNLDSGQVIKTSEIESKVKDL
YALDRFELVTYEFENVDGEDQLLVDVNEKSWGPNYLNFRFFLEDDFSTTSQYSLGVSANFTDINKHGAELRTNIEMGTDK
RIEAELFSPFFSSQKLFTSVSIAYSNQNRNLPAGIGEIGEPTLDATKDYLPMSYQEYLSEFALGYQPTLWQELKFGARYT
DGSIEVASLPSLGSGGYKRIGAFASYRLDTLDNFSLPTEGYFVDLEYLISHDDFENESSNGGSDFSSESDTVFELSANFM
AAQSIEKHTLVAKVDYGIVESKNSVFPIDPKELGGFLNLSGIPRNSLIGQNLAYTSLIYRYKWFENDFGLFESPFYVGAS
IEHGGVWSNNDLKLDEAPMYTAGSVFAGVDSPIGPIILAYGRTEDNFDSVYLIVGTSYK

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656041, Length=299, Percent_Identity=30.4347826086957, Blast_Score=124, Evalue=3e-28,
Organism=Homo sapiens, GI116256487, Length=299, Percent_Identity=30.4347826086957, Blast_Score=124, Evalue=3e-28,
Organism=Homo sapiens, GI260656043, Length=299, Percent_Identity=30.4347826086957, Blast_Score=124, Evalue=3e-28,
Organism=Homo sapiens, GI260656039, Length=299, Percent_Identity=30.4347826086957, Blast_Score=124, Evalue=3e-28,
Organism=Homo sapiens, GI260656037, Length=299, Percent_Identity=30.4347826086957, Blast_Score=124, Evalue=3e-28,
Organism=Homo sapiens, GI148727335, Length=309, Percent_Identity=30.42071197411, Blast_Score=120, Evalue=6e-27,
Organism=Homo sapiens, GI148727290, Length=309, Percent_Identity=30.42071197411, Blast_Score=119, Evalue=9e-27,
Organism=Escherichia coli, GI226510936, Length=331, Percent_Identity=25.3776435045317, Blast_Score=103, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI71997299, Length=321, Percent_Identity=26.1682242990654, Blast_Score=80, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI71997289, Length=321, Percent_Identity=26.1682242990654, Blast_Score=80, Evalue=6e-15,
Organism=Saccharomyces cerevisiae, GI6323581, Length=307, Percent_Identity=27.3615635179153, Blast_Score=107, Evalue=7e-24,
Organism=Drosophila melanogaster, GI281376913, Length=311, Percent_Identity=28.2958199356913, Blast_Score=97, Evalue=4e-20,
Organism=Drosophila melanogaster, GI28571388, Length=311, Percent_Identity=27.6527331189711, Blast_Score=92, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 86649; Mature: 86649

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISRWLVSSLGIVGTVISFQLFAATAAQVDSSEHVELKQAHKRPTVAVVLAGGGAKGAAH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEEEEECCCCCCHHH
IGVLKALEEMQIPVDYITGTSMGAYVGGLYATGMSADEIESFIYTVDWNRGYRDRVNRSD
HHHHHHHHHHCCCHHEECCCCHHHHHHHHHHCCCCHHHHCEEEEEEECCCCHHHHCCCCH
RRVRDKEYEDRYQLNTDLGLGWGEIKARKGVVQGQNMLRILRETTGNLSPLDSFDSLAIP
HHHCCCCCCCCEEECCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
YRSVATDIIDLEEVVIDHGHLVDAMMASMSVPGALPPYEVDGRMLVDGGVTNNMPVDVAR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCHHHHH
AMGADIVIAIDISTNYKSKEDFTNFLAAADQLSNYLVQRSTQEQAATLTDDDFFLRPDVG
HCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCEECCCCEEECCCCC
QMETTEFDKMPTAYHAGYEATRQYTDQLSKLALSNADYQKYIDQKQQARKQLKHGDQTVV
CCCCCHHHCCCCHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHH
DRVIINNNTHYSDKLIENRLNLDSGQVIKTSEIESKVKDLYALDRFELVTYEFENVDGED
HEEEECCCCCHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHCCEEEEEEEECCCCCCC
QLLVDVNEKSWGPNYLNFRFFLEDDFSTTSQYSLGVSANFTDINKHGAELRTNIEMGTDK
EEEEEECCCCCCCCEEEEEEEEECCCCCCCEEEECEECCCCCCCCCCCCEEEECCCCCCC
RIEAELFSPFFSSQKLFTSVSIAYSNQNRNLPAGIGEIGEPTLDATKDYLPMSYQEYLSE
CHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHH
FALGYQPTLWQELKFGARYTDGSIEVASLPSLGSGGYKRIGAFASYRLDTLDNFSLPTEG
HHCCCCCHHHHHHHCCCEECCCCEEEEECCCCCCCCHHHHHHHHHEEECCCCCCCCCCCC
YFVDLEYLISHDDFENESSNGGSDFSSESDTVFELSANFMAAQSIEKHTLVAKVDYGIVE
EEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHEEEEEECCCEEE
SKNSVFPIDPKELGGFLNLSGIPRNSLIGQNLAYTSLIYRYKWFENDFGLFESPFYVGAS
CCCCCCCCCHHHHCCEEEECCCCCHHHCCCCHHHHHHHHHHEEECCCCCCCCCCEEEECE
IEHGGVWSNNDLKLDEAPMYTAGSVFAGVDSPIGPIILAYGRTEDNFDSVYLIVGTSYK
ECCCCCCCCCCCEECCCCCEECCCEEECCCCCCCCEEEEECCCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MISRWLVSSLGIVGTVISFQLFAATAAQVDSSEHVELKQAHKRPTVAVVLAGGGAKGAAH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEEEEECCCCCCHHH
IGVLKALEEMQIPVDYITGTSMGAYVGGLYATGMSADEIESFIYTVDWNRGYRDRVNRSD
HHHHHHHHHHCCCHHEECCCCHHHHHHHHHHCCCCHHHHCEEEEEEECCCCHHHHCCCCH
RRVRDKEYEDRYQLNTDLGLGWGEIKARKGVVQGQNMLRILRETTGNLSPLDSFDSLAIP
HHHCCCCCCCCEEECCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
YRSVATDIIDLEEVVIDHGHLVDAMMASMSVPGALPPYEVDGRMLVDGGVTNNMPVDVAR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCHHHHH
AMGADIVIAIDISTNYKSKEDFTNFLAAADQLSNYLVQRSTQEQAATLTDDDFFLRPDVG
HCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCEECCCCEEECCCCC
QMETTEFDKMPTAYHAGYEATRQYTDQLSKLALSNADYQKYIDQKQQARKQLKHGDQTVV
CCCCCHHHCCCCHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHH
DRVIINNNTHYSDKLIENRLNLDSGQVIKTSEIESKVKDLYALDRFELVTYEFENVDGED
HEEEECCCCCHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHCCEEEEEEEECCCCCCC
QLLVDVNEKSWGPNYLNFRFFLEDDFSTTSQYSLGVSANFTDINKHGAELRTNIEMGTDK
EEEEEECCCCCCCCEEEEEEEEECCCCCCCEEEECEECCCCCCCCCCCCEEEECCCCCCC
RIEAELFSPFFSSQKLFTSVSIAYSNQNRNLPAGIGEIGEPTLDATKDYLPMSYQEYLSE
CHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHH
FALGYQPTLWQELKFGARYTDGSIEVASLPSLGSGGYKRIGAFASYRLDTLDNFSLPTEG
HHCCCCCHHHHHHHCCCEECCCCEEEEECCCCCCCCHHHHHHHHHEEECCCCCCCCCCCC
YFVDLEYLISHDDFENESSNGGSDFSSESDTVFELSANFMAAQSIEKHTLVAKVDYGIVE
EEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHEEEEEECCCEEE
SKNSVFPIDPKELGGFLNLSGIPRNSLIGQNLAYTSLIYRYKWFENDFGLFESPFYVGAS
CCCCCCCCCHHHHCCEEEECCCCCHHHCCCCHHHHHHHHHHEEECCCCCCCCCCEEEECE
IEHGGVWSNNDLKLDEAPMYTAGSVFAGVDSPIGPIILAYGRTEDNFDSVYLIVGTSYK
ECCCCCCCCCCCEECCCCCEECCCEEECCCCCCCCEEEEECCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]