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The map label for this gene is dppB [C]

Identifier: 218710468

GI number: 218710468

Start: 2687752

End: 2688738

Strand: Direct

Name: dppB [C]

Synonym: VS_2507

Alternate gene names: 218710468

Gene position: 2687752-2688738 (Clockwise)

Preceding gene: 218710467

Following gene: 218710469

Centisome position: 81.46

GC content: 43.87

Gene sequence:

>987_bases
ATGGGTTATTTTTTAAGACGTTTGTCATTTTATTTTGTCGCGCTATTAGTTGCAGCGACGTTAAACTTTATTATTCCAAG
AGCAATGCCTGGTGACCCAGTTACCATGATGTTTGCGAACGCTTCTGTACAAGTTACTCCTGAGCGTATTGCTGCAATGA
AAGAACTATTAGGCTTCGTTGATGGGGGCTTACTGGTTCAATACGGCGCATACATGAAGAACATTCTAAGCTGGGAGCTT
GGTACATCAATTCAATTCTACCCACTTTCTGTAAATACTCTGTTGGGTGGAGCATTTGGTTGGTCGCTATTCTTAGCAGG
TACCGCCGTTATTCTTTCTTTCTCTATTGGTTCAATCCTAGGTATTTTTGCAGCGTGGAAACGTGGCAGCAAATACGATG
CATTTGTGACTCCAGGGATGCTGATTTTACAAGCCGTTCCTCAGGTTGTTATTGCCATGATTGCGCTGTTTACCTTCGCA
ATCGGCTTGAAATGGTTCCCAACAGGTTACGCCTATACCGCGGGTACGATACCTGACTGGACAAGCTGGGCATTCATTAA
AGATGTCGCTTACCACGCCTTCTTACCTTTGCTATGTGCATCTATTGTTCAAATTGGTGGCTTCCTAGTAAACATGCGTA
ACAACATGATCAACCTGCTAGCTGAAGATTACATCACCATGGCGAAAGGCAAAGGCCTGAGCGAAAACCGAGTGGTATTC
AATTACGCAGCTCGTAACGCGATGCTACCAAGTGTGACAGCACTTTCTATGTCGTTAGGTATGGCAATCGGTGGTCAGTT
AATTATCGAAATCATCTTTAACTACCCAGGTCTTGGCAGCGTACTTTTCAACGCAATTAACGCTCGTGATTACCAAGTAC
TGCAAGGCCAACTGCTTATCATGACGCTATTCATGCTGTTCTTTAACCTAGTTGCAGACATGCTTTACGTTGTTCTTGAC
CCTCGTCTTCGTAAGGGTGGTAAATAA

Upstream 100 bases:

>100_bases
GTATGGCGCTAGTCGTCAGGGGATTTTTCGTTCCAAATTTCGCTAGGAGCGACCTGAATCCAGAAACAGGGAAACAATCT
GGGTGAGTAAGGTGTGAGTT

Downstream 100 bases:

>100_bases
TCATGAAAGATATTCTAAAACTCATTTGGCGTAACCCGATGGCCTTAACCGGCGTCATTATCCTAAGTATTTTTATTCTT
GGTGCTATTGCGGCTCCATT

Product: peptide ABC transporter permease

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MGYFLRRLSFYFVALLVAATLNFIIPRAMPGDPVTMMFANASVQVTPERIAAMKELLGFVDGGLLVQYGAYMKNILSWEL
GTSIQFYPLSVNTLLGGAFGWSLFLAGTAVILSFSIGSILGIFAAWKRGSKYDAFVTPGMLILQAVPQVVIAMIALFTFA
IGLKWFPTGYAYTAGTIPDWTSWAFIKDVAYHAFLPLLCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVF
NYAARNAMLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGSVLFNAINARDYQVLQGQLLIMTLFMLFFNLVADMLYVVLD
PRLRKGGK

Sequences:

>Translated_328_residues
MGYFLRRLSFYFVALLVAATLNFIIPRAMPGDPVTMMFANASVQVTPERIAAMKELLGFVDGGLLVQYGAYMKNILSWEL
GTSIQFYPLSVNTLLGGAFGWSLFLAGTAVILSFSIGSILGIFAAWKRGSKYDAFVTPGMLILQAVPQVVIAMIALFTFA
IGLKWFPTGYAYTAGTIPDWTSWAFIKDVAYHAFLPLLCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVF
NYAARNAMLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGSVLFNAINARDYQVLQGQLLIMTLFMLFFNLVADMLYVVLD
PRLRKGGK
>Mature_327_residues
GYFLRRLSFYFVALLVAATLNFIIPRAMPGDPVTMMFANASVQVTPERIAAMKELLGFVDGGLLVQYGAYMKNILSWELG
TSIQFYPLSVNTLLGGAFGWSLFLAGTAVILSFSIGSILGIFAAWKRGSKYDAFVTPGMLILQAVPQVVIAMIALFTFAI
GLKWFPTGYAYTAGTIPDWTSWAFIKDVAYHAFLPLLCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVFN
YAARNAMLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGSVLFNAINARDYQVLQGQLLIMTLFMLFFNLVADMLYVVLDP
RLRKGGK

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=340, Percent_Identity=29.7058823529412, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1787053, Length=325, Percent_Identity=28.3076923076923, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1787497, Length=324, Percent_Identity=27.1604938271605, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1789888, Length=326, Percent_Identity=29.7546012269939, Blast_Score=130, Evalue=9e-32,
Organism=Escherichia coli, GI1788504, Length=366, Percent_Identity=27.3224043715847, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1787761, Length=347, Percent_Identity=27.0893371757925, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787550, Length=274, Percent_Identity=21.8978102189781, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35985; Mature: 35854

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYFLRRLSFYFVALLVAATLNFIIPRAMPGDPVTMMFANASVQVTPERIAAMKELLGFV
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCEEEECHHHHHHHHHHHHHH
DGGLLVQYGAYMKNILSWELGTSIQFYPLSVNTLLGGAFGWSLFLAGTAVILSFSIGSIL
CCCHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIFAAWKRGSKYDAFVTPGMLILQAVPQVVIAMIALFTFAIGLKWFPTGYAYTAGTIPDW
HHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCC
TSWAFIKDVAYHAFLPLLCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
NYAARNAMLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGSVLFNAINARDYQVLQGQLLI
EEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHH
MTLFMLFFNLVADMLYVVLDPRLRKGGK
HHHHHHHHHHHHHHHHHHHCHHHHCCCC
>Mature Secondary Structure 
GYFLRRLSFYFVALLVAATLNFIIPRAMPGDPVTMMFANASVQVTPERIAAMKELLGFV
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCEEEECHHHHHHHHHHHHHH
DGGLLVQYGAYMKNILSWELGTSIQFYPLSVNTLLGGAFGWSLFLAGTAVILSFSIGSIL
CCCHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIFAAWKRGSKYDAFVTPGMLILQAVPQVVIAMIALFTFAIGLKWFPTGYAYTAGTIPDW
HHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCC
TSWAFIKDVAYHAFLPLLCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSENRVVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
NYAARNAMLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGSVLFNAINARDYQVLQGQLLI
EEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHH
MTLFMLFFNLVADMLYVVLDPRLRKGGK
HHHHHHHHHHHHHHHHHHHCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA