| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is toxS [H]
Identifier: 218710238
GI number: 218710238
Start: 2443451
End: 2443978
Strand: Direct
Name: toxS [H]
Synonym: VS_2271
Alternate gene names: 218710238
Gene position: 2443451-2443978 (Clockwise)
Preceding gene: 218710237
Following gene: 218710239
Centisome position: 74.06
GC content: 41.67
Gene sequence:
>528_bases GTGGTCAGTAACATGAAATTAAAATTATCCATTATTTTACTGGTTATCTCTGCTTTCTTGAGCGGTTGGTTGTACTGGGG TAGCGATGCAAAAGTAGAGCGCTTGCTTACACAACACGAATGGCAATCGAAAATGGTGACTCTGATTAGCGATATCAAGC AAGAGGATTCAATCGGGCCACTACGTAAGGTTGAGCTATCATCGAATGCAAAATACCTACCAAATGGTACGTATCTGAGA ATGTCAGTGGTTAGGTTGTATAGCACTCAGACTGCACCCGCAAACGTCATCAATATCTCCGAAACAGGTCAGTGGGATAT CAACGATAACTATTTACTGATTTCGCCAACGGAGTTTAAAGATGTGACTTCTGCTGAGCGCCAAGATTTTTCGGAAGAGC AACTAGAGCTGATCACTCAAGTAATTAAGATGGATGCAGAGCAAAGCCGACGCATTGATATTATTAATCAGAAAGCACTG CTGCTCACTAGCCTAAATCATGGTTCTACGGTGTTATTCTCAAACTAA
Upstream 100 bases:
>100_bases AACTTGGCTCTCAACTATATTCACCCGCAAGCTTACTCGAGCGAGAATGTAACTCTAAGAATTTACGCAAACCAGTCGGA TGTACACGACATTTGTAACG
Downstream 100 bases:
>100_bases TACTGTCTCAAACTAAAATCAGATTAAGCTAAAACTCAACAGTGATTTACTGTATATCATTAAACGATATACCAATAGAA AGGGGCATGATGCCCTTTTT
Product: transmembrane regulatory protein ToxS
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 175; Mature: 175
Protein sequence:
>175_residues MVSNMKLKLSIILLVISAFLSGWLYWGSDAKVERLLTQHEWQSKMVTLISDIKQEDSIGPLRKVELSSNAKYLPNGTYLR MSVVRLYSTQTAPANVINISETGQWDINDNYLLISPTEFKDVTSAERQDFSEEQLELITQVIKMDAEQSRRIDIINQKAL LLTSLNHGSTVLFSN
Sequences:
>Translated_175_residues MVSNMKLKLSIILLVISAFLSGWLYWGSDAKVERLLTQHEWQSKMVTLISDIKQEDSIGPLRKVELSSNAKYLPNGTYLR MSVVRLYSTQTAPANVINISETGQWDINDNYLLISPTEFKDVTSAERQDFSEEQLELITQVIKMDAEQSRRIDIINQKAL LLTSLNHGSTVLFSN >Mature_175_residues MVSNMKLKLSIILLVISAFLSGWLYWGSDAKVERLLTQHEWQSKMVTLISDIKQEDSIGPLRKVELSSNAKYLPNGTYLR MSVVRLYSTQTAPANVINISETGQWDINDNYLLISPTEFKDVTSAERQDFSEEQLELITQVIKMDAEQSRRIDIINQKAL LLTSLNHGSTVLFSN
Specific function: Interacts with toxR and stimulates its activity [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein; Periplasmic side [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19895; Mature: 19895
Theoretical pI: Translated: 5.26; Mature: 5.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSNMKLKLSIILLVISAFLSGWLYWGSDAKVERLLTQHEWQSKMVTLISDIKQEDSIGP CCCCCCHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LRKVELSSNAKYLPNGTYLRMSVVRLYSTQTAPANVINISETGQWDINDNYLLISPTEFK EEEEEECCCCEECCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCEECCCCEEEECCCCCH DVTSAERQDFSEEQLELITQVIKMDAEQSRRIDIINQKALLLTSLNHGSTVLFSN HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCEEEEEC >Mature Secondary Structure MVSNMKLKLSIILLVISAFLSGWLYWGSDAKVERLLTQHEWQSKMVTLISDIKQEDSIGP CCCCCCHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LRKVELSSNAKYLPNGTYLRMSVVRLYSTQTAPANVINISETGQWDINDNYLLISPTEFK EEEEEECCCCEECCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCEECCCCEEEECCCCCH DVTSAERQDFSEEQLELITQVIKMDAEQSRRIDIINQKALLLTSLNHGSTVLFSN HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8509337; 12620739; 10655349 [H]