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The map label for this gene is yoaA [H]

Identifier: 218710194

GI number: 218710194

Start: 2389794

End: 2391722

Strand: Reverse

Name: yoaA [H]

Synonym: VS_2226

Alternate gene names: 218710194

Gene position: 2391722-2389794 (Counterclockwise)

Preceding gene: 218710195

Following gene: 218710193

Centisome position: 72.49

GC content: 48.16

Gene sequence:

>1929_bases
ATGATATCTAAAACGTTTTCTGCTGATGGTGCTTTGGGTAAAGCGATCCCTGGGTTCCAACCTCGACAAGCCCAGCTAGA
CATGGCTGAAGCGGTTTCACAGGCTATTGAACAACAGAGCCAATTGGTCGTTGAAGCGGGAACGGGGACAGGTAAGACGT
TTGCTTATCTAGTGCCAGCACTGCTGAGTGGTAAGAAAACGATCATCAGTACGGGGTCTAAAAACCTTCAAGAACAGCTG
TTTCACCGAGATTTACCATTGATGGTCGATGCGCTTGGTTTTTATGGTCAGGTTGCGCTACTCAAAGGCCGTTCAAACTA
TTTGTGCTTGGACAGGCTCAGTCGTCAAATGATCGAGAGCCATGGCACTCACACCGATCCAACGCTGTTAGCTCAGTTGG
TGAAAGTGCGCAGCTGGTCGTCAGCGACTCAAACTGGCGATTTAGGTGACTGTGATGATATTGCTGAAGATAGCCCGGTC
ATTCCAACCATTACCTCGACTAACGACAACTGCTTAGGCAAAGAGTGTCCAAGCTACACCGATTGCTTTGTGCTGAAGGC
GCGTAAAAAAGCTATGGATTCTGATGTTGTTGTAGTGAACCACCACTTGTTCCTCGCGGATTTAGCGATCAAAGAAACCG
GGTTTGGTGAGCTGATACCTGAAGCCGATGTGTTTATCTTCGATGAAGCGCACCAACTTCCCGATATCGCTAGCCAATAC
TTCGGACAATCGGTTTCCAGCCGACAGATCCAAGAGCTAGCCAAGGACATTGAAATTGCTTACCGAACTGAAGCCAAAGA
CATGCGCCAACTGCAGAAAGTAGGGGATAGGCTCGTTCAATCGTCAGCCGATCTACGCATTGTGCTTGGCGATACGGGCT
TTCGCGGTAACTGGCGTGAAGCATTGAAGTCAGAGTCGATTGCGAGAGAGTTAGTTCGCTTACAAGATGCGTTGCAATTG
GCCGTTGATGTATTGAAATTAGCATTGGGTCGAAGCCAGTTGTTAGACACGGCTTTTGAACGCGCCACTATGATCAAATC
GCGCATTGAACGTGTATGTGACGTGTCGATTACTGGTTATTCGTATTGGTATGACACCACGCCACGACACTTTGCTTTGC
ACATCACGCCACTCTCAGTCGCCGACAAATTCCATGAGCAGATTGAGCTAAAACCGGGTGCTTGGGTGTTTACCTCTGCA
ACTTTGGCGGTGTCGGACGATTTCGACCATTTCACCTCACGGCTTGGGCTAAAACCGTCAGCACAATTTTCACTACCGAG
CCCGTTTGATTACCCAAATCAGGCGCGTTTGTGTGTGCCTCGCTATCTACCAGAACCGAATAGCCCGGGCTTAGCGGACA
AGCTAGTAAGAATGCTGACCCCTGTGATTGAGCAAAACCAAGGTCGCTGTTTCTTCTTATGTACCTCACACAGCATGATG
AAAGAGTTGGGTGAACGGTTCCGCGAAACGCTCTCGGTTCCCGTTCTGCTGCAAGGTGAGACAAGTAAGCAAAAAACCTT
AGCAGAATTCATGGAATTAGGTAATGCATTGCTGGTGGCCACAGGTGCTTTCTGGGAAGGCATAGATGTTAGGGGCGATG
CATTAAGCTGTGTTATCATCGATAAATTGCCCTTTACAGCCCCTGATGACCCTTTGCTTAAGGCTCGAATTGAAGACTGT
AAGTTGAAAGGGGGTGATCCTTTTGCACAAGTACAATTGCCAGACGCAGTGATTACCTTGAAACAAGGTGTCGGTCGATT
GATACGTGATAAGCGCGATAATGGCGCTTTGATTATCTGCGACAACCGATTAGTGACTCGCGATTACGGTGGCATATTTT
TGGCGAGTTTACCGCCTATCCCACGTACTCGTGACTTAGGGGTCATTAAAGAATTCTTAGCTAAAGACCATTCAACCGCT
GCTGAGTAA

Upstream 100 bases:

>100_bases
AACCCGAACCAAACACCTCCGGTGCGAAGTCATTCTTGATTCGCGCCGGCTCACTAAACCTGCCATAATTCGCCTTCTAT
TTTTCTAAACTTCGTACTCT

Downstream 100 bases:

>100_bases
TTAGCATTGTTGAGCTTAGCCATTATTTTTAGATTAGATAACGAATATTTGAGACACAAATGAGCGCGAAAATTCTTGCA
GTAGATACCGCAACTGAAAA

Product: putative ATP-dependent helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 642; Mature: 642

Protein sequence:

>642_residues
MISKTFSADGALGKAIPGFQPRQAQLDMAEAVSQAIEQQSQLVVEAGTGTGKTFAYLVPALLSGKKTIISTGSKNLQEQL
FHRDLPLMVDALGFYGQVALLKGRSNYLCLDRLSRQMIESHGTHTDPTLLAQLVKVRSWSSATQTGDLGDCDDIAEDSPV
IPTITSTNDNCLGKECPSYTDCFVLKARKKAMDSDVVVVNHHLFLADLAIKETGFGELIPEADVFIFDEAHQLPDIASQY
FGQSVSSRQIQELAKDIEIAYRTEAKDMRQLQKVGDRLVQSSADLRIVLGDTGFRGNWREALKSESIARELVRLQDALQL
AVDVLKLALGRSQLLDTAFERATMIKSRIERVCDVSITGYSYWYDTTPRHFALHITPLSVADKFHEQIELKPGAWVFTSA
TLAVSDDFDHFTSRLGLKPSAQFSLPSPFDYPNQARLCVPRYLPEPNSPGLADKLVRMLTPVIEQNQGRCFFLCTSHSMM
KELGERFRETLSVPVLLQGETSKQKTLAEFMELGNALLVATGAFWEGIDVRGDALSCVIIDKLPFTAPDDPLLKARIEDC
KLKGGDPFAQVQLPDAVITLKQGVGRLIRDKRDNGALIICDNRLVTRDYGGIFLASLPPIPRTRDLGVIKEFLAKDHSTA
AE

Sequences:

>Translated_642_residues
MISKTFSADGALGKAIPGFQPRQAQLDMAEAVSQAIEQQSQLVVEAGTGTGKTFAYLVPALLSGKKTIISTGSKNLQEQL
FHRDLPLMVDALGFYGQVALLKGRSNYLCLDRLSRQMIESHGTHTDPTLLAQLVKVRSWSSATQTGDLGDCDDIAEDSPV
IPTITSTNDNCLGKECPSYTDCFVLKARKKAMDSDVVVVNHHLFLADLAIKETGFGELIPEADVFIFDEAHQLPDIASQY
FGQSVSSRQIQELAKDIEIAYRTEAKDMRQLQKVGDRLVQSSADLRIVLGDTGFRGNWREALKSESIARELVRLQDALQL
AVDVLKLALGRSQLLDTAFERATMIKSRIERVCDVSITGYSYWYDTTPRHFALHITPLSVADKFHEQIELKPGAWVFTSA
TLAVSDDFDHFTSRLGLKPSAQFSLPSPFDYPNQARLCVPRYLPEPNSPGLADKLVRMLTPVIEQNQGRCFFLCTSHSMM
KELGERFRETLSVPVLLQGETSKQKTLAEFMELGNALLVATGAFWEGIDVRGDALSCVIIDKLPFTAPDDPLLKARIEDC
KLKGGDPFAQVQLPDAVITLKQGVGRLIRDKRDNGALIICDNRLVTRDYGGIFLASLPPIPRTRDLGVIKEFLAKDHSTA
AE
>Mature_642_residues
MISKTFSADGALGKAIPGFQPRQAQLDMAEAVSQAIEQQSQLVVEAGTGTGKTFAYLVPALLSGKKTIISTGSKNLQEQL
FHRDLPLMVDALGFYGQVALLKGRSNYLCLDRLSRQMIESHGTHTDPTLLAQLVKVRSWSSATQTGDLGDCDDIAEDSPV
IPTITSTNDNCLGKECPSYTDCFVLKARKKAMDSDVVVVNHHLFLADLAIKETGFGELIPEADVFIFDEAHQLPDIASQY
FGQSVSSRQIQELAKDIEIAYRTEAKDMRQLQKVGDRLVQSSADLRIVLGDTGFRGNWREALKSESIARELVRLQDALQL
AVDVLKLALGRSQLLDTAFERATMIKSRIERVCDVSITGYSYWYDTTPRHFALHITPLSVADKFHEQIELKPGAWVFTSA
TLAVSDDFDHFTSRLGLKPSAQFSLPSPFDYPNQARLCVPRYLPEPNSPGLADKLVRMLTPVIEQNQGRCFFLCTSHSMM
KELGERFRETLSVPVLLQGETSKQKTLAEFMELGNALLVATGAFWEGIDVRGDALSCVIIDKLPFTAPDDPLLKARIEDC
KLKGGDPFAQVQLPDAVITLKQGVGRLIRDKRDNGALIICDNRLVTRDYGGIFLASLPPIPRTRDLGVIKEFLAKDHSTA
AE

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase ATP-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788110, Length=633, Percent_Identity=64.7709320695103, Blast_Score=852, Evalue=0.0,
Organism=Escherichia coli, GI1787018, Length=251, Percent_Identity=29.8804780876494, Blast_Score=97, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR010614
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR006935 [H]

Pfam domain/function: PF06733 DEAD_2; PF04851 ResIII [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 70894; Mature: 70894

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISKTFSADGALGKAIPGFQPRQAQLDMAEAVSQAIEQQSQLVVEAGTGTGKTFAYLVPA
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHH
LLSGKKTIISTGSKNLQEQLFHRDLPLMVDALGFYGQVALLKGRSNYLCLDRLSRQMIES
HHCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHHCEEEEEECCCCEEHHHHHHHHHHHH
HGTHTDPTLLAQLVKVRSWSSATQTGDLGDCDDIAEDSPVIPTITSTNDNCLGKECPSYT
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCH
DCFVLKARKKAMDSDVVVVNHHLFLADLAIKETGFGELIPEADVFIFDEAHQLPDIASQY
HHHEEHHHHHCCCCCEEEEECEEEEEHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHH
FGQSVSSRQIQELAKDIEIAYRTEAKDMRQLQKVGDRLVQSSADLRIVLGDTGFRGNWRE
HCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH
ALKSESIARELVRLQDALQLAVDVLKLALGRSQLLDTAFERATMIKSRIERVCDVSITGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCEECCE
SYWYDTTPRHFALHITPLSVADKFHEQIELKPGAWVFTSATLAVSDDFDHFTSRLGLKPS
EEEECCCCCEEEEEEEHHHHHHHHHHHEECCCCCEEEEEEEEEECCCHHHHHHHCCCCCC
AQFSLPSPFDYPNQARLCVPRYLPEPNSPGLADKLVRMLTPVIEQNQGRCFFLCTSHSMM
CCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
KELGERFRETLSVPVLLQGETSKQKTLAEFMELGNALLVATGAFWEGIDVRGDALSCVII
HHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEE
DKLPFTAPDDPLLKARIEDCKLKGGDPFAQVQLPDAVITLKQGVGRLIRDKRDNGALIIC
ECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEE
DNRLVTRDYGGIFLASLPPIPRTRDLGVIKEFLAKDHSTAAE
CCEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MISKTFSADGALGKAIPGFQPRQAQLDMAEAVSQAIEQQSQLVVEAGTGTGKTFAYLVPA
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHH
LLSGKKTIISTGSKNLQEQLFHRDLPLMVDALGFYGQVALLKGRSNYLCLDRLSRQMIES
HHCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHHCEEEEEECCCCEEHHHHHHHHHHHH
HGTHTDPTLLAQLVKVRSWSSATQTGDLGDCDDIAEDSPVIPTITSTNDNCLGKECPSYT
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCH
DCFVLKARKKAMDSDVVVVNHHLFLADLAIKETGFGELIPEADVFIFDEAHQLPDIASQY
HHHEEHHHHHCCCCCEEEEECEEEEEHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHH
FGQSVSSRQIQELAKDIEIAYRTEAKDMRQLQKVGDRLVQSSADLRIVLGDTGFRGNWRE
HCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH
ALKSESIARELVRLQDALQLAVDVLKLALGRSQLLDTAFERATMIKSRIERVCDVSITGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCEECCE
SYWYDTTPRHFALHITPLSVADKFHEQIELKPGAWVFTSATLAVSDDFDHFTSRLGLKPS
EEEECCCCCEEEEEEEHHHHHHHHHHHEECCCCCEEEEEEEEEECCCHHHHHHHCCCCCC
AQFSLPSPFDYPNQARLCVPRYLPEPNSPGLADKLVRMLTPVIEQNQGRCFFLCTSHSMM
CCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
KELGERFRETLSVPVLLQGETSKQKTLAEFMELGNALLVATGAFWEGIDVRGDALSCVII
HHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEE
DKLPFTAPDDPLLKARIEDCKLKGGDPFAQVQLPDAVITLKQGVGRLIRDKRDNGALIIC
ECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEE
DNRLVTRDYGGIFLASLPPIPRTRDLGVIKEFLAKDHSTAAE
CCEEEEECCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]