| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218710077
Identifier: 218710077
GI number: 218710077
Start: 2250740
End: 2251669
Strand: Direct
Name: 218710077
Synonym: VS_2098
Alternate gene names: NA
Gene position: 2250740-2251669 (Clockwise)
Preceding gene: 218710072
Following gene: 218710078
Centisome position: 68.22
GC content: 43.98
Gene sequence:
>930_bases ATGACCCTCGGTATCAATATGAAAAACACTAAAATAATTTCCCTACTCTTAAGCGGTGCGGCTATCGCTTACTCCGGTTC TGCGCTGGCTGAAAAGGAACAACTCTCAGTTCAAGAAGCGGCAAAAAAATCAGCAAACCCAGTATCAGATGTATGGATGC TAATTACTCAAAATGATTATACTTTTCTAGAAAAAGAAGATGGTCACCATGAGATGCAAAACCGCTTCAGCTTTCAACCA GTAATGCCGGTTCCTATAATGGATGGTGAATGGAACTTGGTGAACCGTTTGGTTGCCAACCACTACAGTTCACCAGGCGA TCGTGAAAACGGTGATTTCTTTGAAGGACGTACAAACGGTATGGGAGACACTGTCTTTCTATCAATGGCTGCCCCTAACC GTGATGACGGGTGGATTTGGGGTGTTGGTCCAACGATGATCATGCCAACAGGTACTGATGGTTTAACGCAAGACAAGTGG CAAGTCGGCCCTGCAGCAATGGTCGCTCGCCTTGGTAAAGAAACCGGTAACCCAACCAGTATTGAAAGCTGGAACGTTGG TTTCTTAGCTCAGCAATGGTGGGACGTGGGCGGCAGTGACAGCGTTACTGAGTCAACCAATCAAGCGGACATCCAGTATT TCTTAAACTATCGTGTCAGCAACACCGCGTTAATTGGTATGACACCTAATATTCAAATTGATTGGACAAAAGATGGTTCC GACCAATTTACTGTACCTGTCGGATTAGGCTATATCGATATGTTTAAGGTTGGGCCAATGCCAGTTCGTTGGGGTGTAGA ACTTCAATATTACGTAATGAAACCAGATGCAAATGTTAATACAACCAATCCAGCTGAGTATGTGCCATATGCACCAGATT GGAACCTGAAATTCTTTATTGCTCCTGTTACATTAAACCCGTTCAAATAA
Upstream 100 bases:
>100_bases CGCGCTTTGAAATCACAACATTGTCTCAAATTACATGACACTGAGTTTCCGTTCGGTACATATACATTCCTTTTGTGAAT ACTACAATGGCACCAAAATA
Downstream 100 bases:
>100_bases TCGATTTAAATCCCCCTACAGGCTGGTCTAATTTATTTAATATTTTAGGCCAGTCTTTTTAGCACTTTTCATCGACTTCT ATGATCCAAACCAAGTTAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 309; Mature: 308
Protein sequence:
>309_residues MTLGINMKNTKIISLLLSGAAIAYSGSALAEKEQLSVQEAAKKSANPVSDVWMLITQNDYTFLEKEDGHHEMQNRFSFQP VMPVPIMDGEWNLVNRLVANHYSSPGDRENGDFFEGRTNGMGDTVFLSMAAPNRDDGWIWGVGPTMIMPTGTDGLTQDKW QVGPAAMVARLGKETGNPTSIESWNVGFLAQQWWDVGGSDSVTESTNQADIQYFLNYRVSNTALIGMTPNIQIDWTKDGS DQFTVPVGLGYIDMFKVGPMPVRWGVELQYYVMKPDANVNTTNPAEYVPYAPDWNLKFFIAPVTLNPFK
Sequences:
>Translated_309_residues MTLGINMKNTKIISLLLSGAAIAYSGSALAEKEQLSVQEAAKKSANPVSDVWMLITQNDYTFLEKEDGHHEMQNRFSFQP VMPVPIMDGEWNLVNRLVANHYSSPGDRENGDFFEGRTNGMGDTVFLSMAAPNRDDGWIWGVGPTMIMPTGTDGLTQDKW QVGPAAMVARLGKETGNPTSIESWNVGFLAQQWWDVGGSDSVTESTNQADIQYFLNYRVSNTALIGMTPNIQIDWTKDGS DQFTVPVGLGYIDMFKVGPMPVRWGVELQYYVMKPDANVNTTNPAEYVPYAPDWNLKFFIAPVTLNPFK >Mature_308_residues TLGINMKNTKIISLLLSGAAIAYSGSALAEKEQLSVQEAAKKSANPVSDVWMLITQNDYTFLEKEDGHHEMQNRFSFQPV MPVPIMDGEWNLVNRLVANHYSSPGDRENGDFFEGRTNGMGDTVFLSMAAPNRDDGWIWGVGPTMIMPTGTDGLTQDKWQ VGPAAMVARLGKETGNPTSIESWNVGFLAQQWWDVGGSDSVTESTNQADIQYFLNYRVSNTALIGMTPNIQIDWTKDGSD QFTVPVGLGYIDMFKVGPMPVRWGVELQYYVMKPDANVNTTNPAEYVPYAPDWNLKFFIAPVTLNPFK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34326; Mature: 34195
Theoretical pI: Translated: 4.37; Mature: 4.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLGINMKNTKIISLLLSGAAIAYSGSALAEKEQLSVQEAAKKSANPVSDVWMLITQNDY CEEECCCCCHHEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCE TFLEKEDGHHEMQNRFSFQPVMPVPIMDGEWNLVNRLVANHYSSPGDRENGDFFEGRTNG EEEECCCCHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCEECCCCCC MGDTVFLSMAAPNRDDGWIWGVGPTMIMPTGTDGLTQDKWQVGPAAMVARLGKETGNPTS CCCEEEEEEECCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC IESWNVGFLAQQWWDVGGSDSVTESTNQADIQYFLNYRVSNTALIGMTPNIQIDWTKDGS CCCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEECCCEEEEEECCCC DQFTVPVGLGYIDMFKVGPMPVRWGVELQYYVMKPDANVNTTNPAEYVPYAPDWNLKFFI CEEEEEEECCEEEEEECCCCCEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE APVTLNPFK EEEEECCCC >Mature Secondary Structure TLGINMKNTKIISLLLSGAAIAYSGSALAEKEQLSVQEAAKKSANPVSDVWMLITQNDY EEECCCCCHHEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCE TFLEKEDGHHEMQNRFSFQPVMPVPIMDGEWNLVNRLVANHYSSPGDRENGDFFEGRTNG EEEECCCCHHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCEECCCCCC MGDTVFLSMAAPNRDDGWIWGVGPTMIMPTGTDGLTQDKWQVGPAAMVARLGKETGNPTS CCCEEEEEEECCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC IESWNVGFLAQQWWDVGGSDSVTESTNQADIQYFLNYRVSNTALIGMTPNIQIDWTKDGS CCCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEECCCEEEEEECCCC DQFTVPVGLGYIDMFKVGPMPVRWGVELQYYVMKPDANVNTTNPAEYVPYAPDWNLKFFI CEEEEEEECCEEEEEECCCCCEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE APVTLNPFK EEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA