| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is yjcK [H]
Identifier: 218710051
GI number: 218710051
Start: 2224411
End: 2224956
Strand: Direct
Name: yjcK [H]
Synonym: VS_2071
Alternate gene names: 218710051
Gene position: 2224411-2224956 (Clockwise)
Preceding gene: 218710050
Following gene: 218710060
Centisome position: 67.42
GC content: 44.87
Gene sequence:
>546_bases ATGAGCCCTGACTTTCAGATAAATACTCAACACCTCAACCTAAAAATCATTGAAGCCTCAGACGCTCAAGAGTTTTCGCA GCTGGTTAAATCCTCCCCGAGTTTATTGCCATGGCTCGACTGGTGCCACGACGAGTTTTCGACCGTCGAGGCCGAGAGAT TCATTCTTGCGACTCGCTTAAACTGGGTTAAAGCCGATGCGTTTGGCTTTGGTATCTTCGAACGAAAAAGCGAAAAGTTA GTCGGCATGGTGGCCATAAATGAGCTTTACCACACCTTTAATATGGCCAGTTTAGGTTATTGGGTGGGTGATCAATTTCA GAGAAAAGGGATAGCGAAAGAAGCAATGCTTGCCCTATTTGAATTTTGCTTCGCAATGCTCAAGTTGACGCGTTTGGAGA TTGTCTGCGATACAGAGAACCTACCCAGCCAAAAGCTGATCGAGAAATGTGGCGCTGAACGTGAAGCCATTGCAAAGAAT CGCTTTATCTTTAACGGTAAACCGAAAGATGGCGTGGTTTATTCTGTGTTACCTCCATTATCTTAA
Upstream 100 bases:
>100_bases TCAATCCGCCCTCCTAGTGAGGGCGTTTTATTAAGTGCTATCTATCTTTATTCTGCACTGAATCCTTTGTTCAGTACTTA CATGTAATTCGGTATTTCTT
Downstream 100 bases:
>100_bases TCGCTTAATAGAGTAACAATCCGAAATAACACGTACTCGACACGATCAAAAAAGAGCTCCGAAGAGCTCTTTTTTATTAT CAGCGTAATGACCTTAGAAG
Product: putative ribosomal-protein-serine acetyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 181; Mature: 180
Protein sequence:
>181_residues MSPDFQINTQHLNLKIIEASDAQEFSQLVKSSPSLLPWLDWCHDEFSTVEAERFILATRLNWVKADAFGFGIFERKSEKL VGMVAINELYHTFNMASLGYWVGDQFQRKGIAKEAMLALFEFCFAMLKLTRLEIVCDTENLPSQKLIEKCGAEREAIAKN RFIFNGKPKDGVVYSVLPPLS
Sequences:
>Translated_181_residues MSPDFQINTQHLNLKIIEASDAQEFSQLVKSSPSLLPWLDWCHDEFSTVEAERFILATRLNWVKADAFGFGIFERKSEKL VGMVAINELYHTFNMASLGYWVGDQFQRKGIAKEAMLALFEFCFAMLKLTRLEIVCDTENLPSQKLIEKCGAEREAIAKN RFIFNGKPKDGVVYSVLPPLS >Mature_180_residues SPDFQINTQHLNLKIIEASDAQEFSQLVKSSPSLLPWLDWCHDEFSTVEAERFILATRLNWVKADAFGFGIFERKSEKLV GMVAINELYHTFNMASLGYWVGDQFQRKGIAKEAMLALFEFCFAMLKLTRLEIVCDTENLPSQKLIEKCGAEREAIAKNR FIFNGKPKDGVVYSVLPPLS
Specific function: This enzyme acetylates the N-terminal alanine of ribosomal protein S5 [H]
COG id: COG1670
COG function: function code J; Acetyltransferases, including N-acetylases of ribosomal proteins
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 N-acetyltransferase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000182 - InterPro: IPR016181 [H]
Pfam domain/function: PF00583 Acetyltransf_1 [H]
EC number: =2.3.1.128 [H]
Molecular weight: Translated: 20630; Mature: 20499
Theoretical pI: Translated: 5.75; Mature: 5.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPDFQINTQHLNLKIIEASDAQEFSQLVKSSPSLLPWLDWCHDEFSTVEAERFILATRL CCCCCEEEEEEEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC NWVKADAFGFGIFERKSEKLVGMVAINELYHTFNMASLGYWVGDQFQRKGIAKEAMLALF CCEEHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHH EFCFAMLKLTRLEIVCDTENLPSQKLIEKCGAEREAIAKNRFIFNGKPKDGVVYSVLPPL HHHHHHHHHHHHEEEECCCCCCHHHHHHHHCCHHHHHHHCCEEECCCCCCCEEEEECCCC S C >Mature Secondary Structure SPDFQINTQHLNLKIIEASDAQEFSQLVKSSPSLLPWLDWCHDEFSTVEAERFILATRL CCCCEEEEEEEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC NWVKADAFGFGIFERKSEKLVGMVAINELYHTFNMASLGYWVGDQFQRKGIAKEAMLALF CCEEHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHH EFCFAMLKLTRLEIVCDTENLPSQKLIEKCGAEREAIAKNRFIFNGKPKDGVVYSVLPPL HHHHHHHHHHHHEEEECCCCCCHHHHHHHHCCHHHHHHHCCEEECCCCCCCEEEEECCCC S C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]