| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218710044
Identifier: 218710044
GI number: 218710044
Start: 2215314
End: 2215826
Strand: Direct
Name: 218710044
Synonym: VS_2064
Alternate gene names: NA
Gene position: 2215314-2215826 (Clockwise)
Preceding gene: 218710032
Following gene: 218710048
Centisome position: 67.14
GC content: 46.2
Gene sequence:
>513_bases ATGCCAAGAAAGTTTATCAAACGATTTATGCCTGACCATGAGCTAATCAAGCGTCAGAAAGCATTGAAAGTTTTTGGCAA TGTTTTGTACAACCCCAACTTATGGTGTCTTAATCGTCGCTCTGCGGCTGGCGCATTCGCTGTTGGGTTATTCATGGCGT TTGTCCCTCTACCAAGCCAAATGATTATGTCTGCAGGCCTTGCTGTCGCATGTGGCGTTAACCTACCTTTGGCTGTCGCA CTTGTTTGGATCAGTAACCCGGTCACTATGCCCGTTCTCTTCTACTTTGCTTATAAAGTCGGGGCGTTTGTTATGCATGT ACCACCTCAAGCCTTCCATTTCGAATTGTCTTGGGACTTCATCTTGGCGCAAATGAATACAATCGGGCCTCCTTTCTTAC TGGGTTGCCTGATTTGTGGCGTGGTTTCAGCAATGATTGGCTACTTTGGTATTCGCGGGTTATGGCGTTACTCAGTAGTA AGAAGTTGGAAGAAGCGTCAAGCAAGGTACTGA
Upstream 100 bases:
>100_bases CAAACCCAATGAGGCATCACAGGCCAGAAGCTGGCAGACACAACTGTCGCAGCAAATGAAATCAAGAACCAAATGTTAAA CAAGAGAGTAGCTTCCTCCT
Downstream 100 bases:
>100_bases CAACTTTTCCTTGTTGTTCAATCTATCCTTGTATGCGCTTCACTTAAACCGCACACAAGTTAAAGTCAGATGAACCGCAG AACTCTGCAATATTGGGATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 170; Mature: 169
Protein sequence:
>170_residues MPRKFIKRFMPDHELIKRQKALKVFGNVLYNPNLWCLNRRSAAGAFAVGLFMAFVPLPSQMIMSAGLAVACGVNLPLAVA LVWISNPVTMPVLFYFAYKVGAFVMHVPPQAFHFELSWDFILAQMNTIGPPFLLGCLICGVVSAMIGYFGIRGLWRYSVV RSWKKRQARY
Sequences:
>Translated_170_residues MPRKFIKRFMPDHELIKRQKALKVFGNVLYNPNLWCLNRRSAAGAFAVGLFMAFVPLPSQMIMSAGLAVACGVNLPLAVA LVWISNPVTMPVLFYFAYKVGAFVMHVPPQAFHFELSWDFILAQMNTIGPPFLLGCLICGVVSAMIGYFGIRGLWRYSVV RSWKKRQARY >Mature_169_residues PRKFIKRFMPDHELIKRQKALKVFGNVLYNPNLWCLNRRSAAGAFAVGLFMAFVPLPSQMIMSAGLAVACGVNLPLAVAL VWISNPVTMPVLFYFAYKVGAFVMHVPPQAFHFELSWDFILAQMNTIGPPFLLGCLICGVVSAMIGYFGIRGLWRYSVVR SWKKRQARY
Specific function: Unknown
COG id: COG3216
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19206; Mature: 19075
Theoretical pI: Translated: 10.78; Mature: 10.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 7.6 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 7.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRKFIKRFMPDHELIKRQKALKVFGNVLYNPNLWCLNRRSAAGAFAVGLFMAFVPLPSQ CCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCHH MIMSAGLAVACGVNLPLAVALVWISNPVTMPVLFYFAYKVGAFVMHVPPQAFHFELSWDF HHHHCCCHHEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEECCCCCEEEEEHHHH ILAQMNTIGPPFLLGCLICGVVSAMIGYFGIRGLWRYSVVRSWKKRQARY HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PRKFIKRFMPDHELIKRQKALKVFGNVLYNPNLWCLNRRSAAGAFAVGLFMAFVPLPSQ CHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCHH MIMSAGLAVACGVNLPLAVALVWISNPVTMPVLFYFAYKVGAFVMHVPPQAFHFELSWDF HHHHCCCHHEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEECCCCCEEEEEHHHH ILAQMNTIGPPFLLGCLICGVVSAMIGYFGIRGLWRYSVVRSWKKRQARY HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA