| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218709990
Identifier: 218709990
GI number: 218709990
Start: 2156240
End: 2157544
Strand: Reverse
Name: 218709990
Synonym: VS_2009
Alternate gene names: NA
Gene position: 2157544-2156240 (Counterclockwise)
Preceding gene: 218709994
Following gene: 218709989
Centisome position: 65.39
GC content: 42.22
Gene sequence:
>1305_bases GTGAGAGTGAACAAAGTAGCATTAACGATCAGTATGCTATTTGCTATCTCAGGTTGTCAAAGTACACCCTCAGAGCAGAC AGGCGCGAACCAAACCACAAATGACAATGAATCAACAGTAGAGGTCCGTTCATTTCAGTCTGTCCAAAGTGTTTACTCCG AGTGGGAGGCTAAGCTTGAAGAACACGCTCAATTGTCTCTCTATGCTCCAGAGAATTACAATGAACTATTAGACGCTTGG GATGATGCTGAAAGCATTTATGCGGACTTACTGAAAGATCAAACACGGTTAACCAAGAGTTACTCGATTTTTTCGACATT AACTTACGCTGAAGCCTTTGATGAAAAAATCGCGTTGATTCGATCAAATTATGACTCGATCTTAGTGCTAAAGGAAAAGG CTGACAGAGTATTAGCCGACTCGATAGTGCAAATGGATTACTTAAAGTTTCTTGGTGCCGACACTATGTTTGCATCGAGC TACAAGCGCTTGTATTCAGAATACAGCGAGCTGTTTGAGTATGTGCTGGTCGACGAACTTGAAGATGCTCAGGAAGCACA GGTAGAGTTTCTTAATAACGCGAGTTTGTTAGAAGTTAAAGTGGCCCACAAGAAGTACATCGAACCTTTGAAGGATGAGT TGGAGTTCTTGGAAGATGAAGATTTCGATGACGTTGTTCCACTGACGTTTGCTAAAGCGGCATCTCAAATTGCTTTGGCA GAAAGCCAAGTGAAAGCTAGTCCCCGTGAAAAGTCGATCATTGAAGACGCAGTTCACGCTGCGGAGTTCGAATTAAACCA CGTACGCAGTGTTGCTCATGAAGTCAAAGTACTAGCGAGCGTAAAAGGCGACCAGTTCGAACAGTCGGTTTTGAATGCAG AGAACCAGTTATTGAGCATTTCACGAGTGGTTAATGATGAAGATCACCGTGATGTTGTATTGCGTCTTCAGTCTCAAAAA ATTGTAGCGAGTGTTAAAGCGCTGAAAGGCTCAGACATGACGGCGTCATTAAAGTCAGATATTAAAACTTTGACTGAGCG ACTCGCTAAGTTAGAAAGTGATAATCAGAAACAAACACAGAAATTGGTTGAAGCGACCAAGCACAACCAATTGTTAGATG AGCAGATTACCAAGAGTGATGCTCACATAAAGAGCCTAGAAGAGTTAGTGGATAGTTTGAAAAGCTTAGGTGGTAAAGTT GCCACCGAAAGTGACTCTGATGTGATTCTTCCTAGTATTGAATCTAGCCTAGAGGATGCATCTCTCGAACAATCATTAGA AGAAGTGATTGAACCTTCGGTTTAG
Upstream 100 bases:
>100_bases TTAAATTCTGAACGATGTTTATTGGGAAGTGGTTGTAATATATTGTGTTACTAGAAATATATTGCATACAGCTAATATTG TATAAAAAGGAAACGCATTA
Downstream 100 bases:
>100_bases CATCACTAATTTCTTTATTTGTGATTGAGTTAAAAGCGCCTAAGGGCGCTTTTTTACGTTCTGTTGATCTATGTCAAAAT CTGGAAACAAAAGCGCTCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 434; Mature: 434
Protein sequence:
>434_residues MRVNKVALTISMLFAISGCQSTPSEQTGANQTTNDNESTVEVRSFQSVQSVYSEWEAKLEEHAQLSLYAPENYNELLDAW DDAESIYADLLKDQTRLTKSYSIFSTLTYAEAFDEKIALIRSNYDSILVLKEKADRVLADSIVQMDYLKFLGADTMFASS YKRLYSEYSELFEYVLVDELEDAQEAQVEFLNNASLLEVKVAHKKYIEPLKDELEFLEDEDFDDVVPLTFAKAASQIALA ESQVKASPREKSIIEDAVHAAEFELNHVRSVAHEVKVLASVKGDQFEQSVLNAENQLLSISRVVNDEDHRDVVLRLQSQK IVASVKALKGSDMTASLKSDIKTLTERLAKLESDNQKQTQKLVEATKHNQLLDEQITKSDAHIKSLEELVDSLKSLGGKV ATESDSDVILPSIESSLEDASLEQSLEEVIEPSV
Sequences:
>Translated_434_residues MRVNKVALTISMLFAISGCQSTPSEQTGANQTTNDNESTVEVRSFQSVQSVYSEWEAKLEEHAQLSLYAPENYNELLDAW DDAESIYADLLKDQTRLTKSYSIFSTLTYAEAFDEKIALIRSNYDSILVLKEKADRVLADSIVQMDYLKFLGADTMFASS YKRLYSEYSELFEYVLVDELEDAQEAQVEFLNNASLLEVKVAHKKYIEPLKDELEFLEDEDFDDVVPLTFAKAASQIALA ESQVKASPREKSIIEDAVHAAEFELNHVRSVAHEVKVLASVKGDQFEQSVLNAENQLLSISRVVNDEDHRDVVLRLQSQK IVASVKALKGSDMTASLKSDIKTLTERLAKLESDNQKQTQKLVEATKHNQLLDEQITKSDAHIKSLEELVDSLKSLGGKV ATESDSDVILPSIESSLEDASLEQSLEEVIEPSV >Mature_434_residues MRVNKVALTISMLFAISGCQSTPSEQTGANQTTNDNESTVEVRSFQSVQSVYSEWEAKLEEHAQLSLYAPENYNELLDAW DDAESIYADLLKDQTRLTKSYSIFSTLTYAEAFDEKIALIRSNYDSILVLKEKADRVLADSIVQMDYLKFLGADTMFASS YKRLYSEYSELFEYVLVDELEDAQEAQVEFLNNASLLEVKVAHKKYIEPLKDELEFLEDEDFDDVVPLTFAKAASQIALA ESQVKASPREKSIIEDAVHAAEFELNHVRSVAHEVKVLASVKGDQFEQSVLNAENQLLSISRVVNDEDHRDVVLRLQSQK IVASVKALKGSDMTASLKSDIKTLTERLAKLESDNQKQTQKLVEATKHNQLLDEQITKSDAHIKSLEELVDSLKSLGGKV ATESDSDVILPSIESSLEDASLEQSLEEVIEPSV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48610; Mature: 48610
Theoretical pI: Translated: 4.26; Mature: 4.26
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVNKVALTISMLFAISGCQSTPSEQTGANQTTNDNESTVEVRSFQSVQSVYSEWEAKLE CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH EHAQLSLYAPENYNELLDAWDDAESIYADLLKDQTRLTKSYSIFSTLTYAEAFDEKIALI HCCEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RSNYDSILVLKEKADRVLADSIVQMDYLKFLGADTMFASSYKRLYSEYSELFEYVLVDEL HCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH EDAQEAQVEFLNNASLLEVKVAHKKYIEPLKDELEFLEDEDFDDVVPLTFAKAASQIALA HHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH ESQVKASPREKSIIEDAVHAAEFELNHVRSVAHEVKVLASVKGDQFEQSVLNAENQLLSI HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH SRVVNDEDHRDVVLRLQSQKIVASVKALKGSDMTASLKSDIKTLTERLAKLESDNQKQTQ HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH KLVEATKHNQLLDEQITKSDAHIKSLEELVDSLKSLGGKVATESDSDVILPSIESSLEDA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEECCCHHHHHHHH SLEQSLEEVIEPSV HHHHHHHHHHCCCC >Mature Secondary Structure MRVNKVALTISMLFAISGCQSTPSEQTGANQTTNDNESTVEVRSFQSVQSVYSEWEAKLE CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH EHAQLSLYAPENYNELLDAWDDAESIYADLLKDQTRLTKSYSIFSTLTYAEAFDEKIALI HCCEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RSNYDSILVLKEKADRVLADSIVQMDYLKFLGADTMFASSYKRLYSEYSELFEYVLVDEL HCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH EDAQEAQVEFLNNASLLEVKVAHKKYIEPLKDELEFLEDEDFDDVVPLTFAKAASQIALA HHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH ESQVKASPREKSIIEDAVHAAEFELNHVRSVAHEVKVLASVKGDQFEQSVLNAENQLLSI HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH SRVVNDEDHRDVVLRLQSQKIVASVKALKGSDMTASLKSDIKTLTERLAKLESDNQKQTQ HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH KLVEATKHNQLLDEQITKSDAHIKSLEELVDSLKSLGGKVATESDSDVILPSIESSLEDA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEECCCHHHHHHHH SLEQSLEEVIEPSV HHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA