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The map label for this gene is dcrA [H]

Identifier: 218709960

GI number: 218709960

Start: 2123293

End: 2124975

Strand: Reverse

Name: dcrA [H]

Synonym: VS_1979

Alternate gene names: 218709960

Gene position: 2124975-2123293 (Counterclockwise)

Preceding gene: 218709961

Following gene: 218709959

Centisome position: 64.41

GC content: 44.68

Gene sequence:

>1683_bases
GTGTGGTGGCCGATATATCTTTCGGTTAGGCTATATCGGCCTGTATTTATTTTAGGTAGGTGTTGTGTGAAATTGTCAGT
GAGAAAAAAACTATATTTGGGTTTTGGATCTATATTGGCGGTGCTTGTCACGTTAGTAGGGATTGTATCGATAGAAGTGA
TTGGGGCTCACGAGAGCTCTGATGAAATTAGACTGGATGATGTTCCAGGAACTGTTACCTACCTTATATTGATCGATGAA
GCTGGTGATGTTTACCGTGATGCTTTGGGCGCGGTTGTTCAGGGCGGTAATGCGCTCAATGATTATCGAGCTAATAAGAC
TCAATTTTCTCAAGCAATTGAAGAAGCAAAGCGTTTAGAGAGTAAAGGCTCAGAGGACCATCGTCGTGTTCAGCGAATTG
AAGAGCTAATGGGGCGCTTTACTCAAGAGTTTGAATCGAAGCTCGTACCTATGCTTAATGATGAAACTGCATTGTTATCA
AATATCCAGCAGCTTCGCTCTTTGTATGAGAGTAATCTTATCCCGATTGAAAATTTGCTTGATCAAGCATCTGAAAGTGA
GATTGCTGATACAGAGCGAGCTCTGCTAACACTAACGGATTCGTTTATTACAATCGAACGCACGATTATGGTGTTGACTG
CGGTTGCGATTGTGTTTGGTTGCGTAATTGCGTTTGTATTGTCTAGCTCTATTACCAACCGTTTGACTCGTGTTGAACAA
GTTGCACGCCGCGTAGCAAATGGTGATCTGACGGCTGGAGATATTGTTGATGATTCTGGTGATGAATTGGCTGATCTTGC
TCAATCGATCAACCAGATGCAAAAGTCATTGGTCGATCTCCTCGGTTCTATTTCATCAGTGACTACCCAAGTTCAATCCG
TTACTGGTGAGCTATCATCAATCAGCCACGACATCGTATCTGGCGCCTCTGCTCAAGCAGATAAAGCGACATTGATTGCG
ACTGCGGCAGAAGAACTAAGCTTAACCATTTCTGAAGTAGCGCAACAAGGTACTTCTACTTATGAAGAAGCGCGCCGCTC
AGAAACGTCTGCAGAAGACGGTCGTAAAGTGATCGTGGAGATGGTTGCGAGCATCCAACAAGTGTCTACTCAAATGAGCG
ACATGTCGTTACAAATGAACACGCTGGGTTCACATGGTGAGCAGATTGGCAGTGTTATCAAGGTAATCGAAGATATCGCA
GAACAAACCAACCTCTTGGCTCTGAACGCGGCTATTGAAGCTGCGCGTGCTGGTGAGTTCGGTCGTGGTTTTGCCGTGGT
AGCTGATGAAGTACGAGCGCTAGCGGAGAGAACGACTAAAGCAACACAAGAAGTGTCTGGTATCATCCAATCTATTCAAT
CTGGTACTCAAGAAGCGGTTACTTACACTCAAGACAACTGTCGTTTAGTTGAAATTGGTGTAGAGCAAAGTACAGGGGCG
GTATCGGCTCTAGAAGCAATTGTTAGCGGTGCGGGCAACGTACAAAGTATGGTTAATTCAATTGCGACTGCGGCAGAAGA
ACAGACAGCGGTGACAAAAGAAATCGCAGCGGATATTACGGCAATCAGTGATATCTCTGAACAGTCATTACAGTTAGCGA
CTCGCAGCTCTGAGAACACATCAGGTTTGAATGCTAAAGTTGCCGAACTTGAAGGCTTAGTAGGTAAGTTCAAACTTGCT
TAG

Upstream 100 bases:

>100_bases
ACTAAAGTTAATTGATAAGCGGGAGCCATTGGCTCCCGTTTTTTATGCGACGTACTTATTGTTTTTCGAGAAATAAAAAC
ATCGTCCCCTAAAGTTATCC

Downstream 100 bases:

>100_bases
AGCTTAGAGCTGGATCATAAGTCTAGAACATAAGCTTAGAGCGAATTGATTAAAGACTTCCCAGTGAAAGTTGACTATTG
AAACATAAGCCCAACGATTC

Product: methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 560; Mature: 560

Protein sequence:

>560_residues
MWWPIYLSVRLYRPVFILGRCCVKLSVRKKLYLGFGSILAVLVTLVGIVSIEVIGAHESSDEIRLDDVPGTVTYLILIDE
AGDVYRDALGAVVQGGNALNDYRANKTQFSQAIEEAKRLESKGSEDHRRVQRIEELMGRFTQEFESKLVPMLNDETALLS
NIQQLRSLYESNLIPIENLLDQASESEIADTERALLTLTDSFITIERTIMVLTAVAIVFGCVIAFVLSSSITNRLTRVEQ
VARRVANGDLTAGDIVDDSGDELADLAQSINQMQKSLVDLLGSISSVTTQVQSVTGELSSISHDIVSGASAQADKATLIA
TAAEELSLTISEVAQQGTSTYEEARRSETSAEDGRKVIVEMVASIQQVSTQMSDMSLQMNTLGSHGEQIGSVIKVIEDIA
EQTNLLALNAAIEAARAGEFGRGFAVVADEVRALAERTTKATQEVSGIIQSIQSGTQEAVTYTQDNCRLVEIGVEQSTGA
VSALEAIVSGAGNVQSMVNSIATAAEEQTAVTKEIAADITAISDISEQSLQLATRSSENTSGLNAKVAELEGLVGKFKLA

Sequences:

>Translated_560_residues
MWWPIYLSVRLYRPVFILGRCCVKLSVRKKLYLGFGSILAVLVTLVGIVSIEVIGAHESSDEIRLDDVPGTVTYLILIDE
AGDVYRDALGAVVQGGNALNDYRANKTQFSQAIEEAKRLESKGSEDHRRVQRIEELMGRFTQEFESKLVPMLNDETALLS
NIQQLRSLYESNLIPIENLLDQASESEIADTERALLTLTDSFITIERTIMVLTAVAIVFGCVIAFVLSSSITNRLTRVEQ
VARRVANGDLTAGDIVDDSGDELADLAQSINQMQKSLVDLLGSISSVTTQVQSVTGELSSISHDIVSGASAQADKATLIA
TAAEELSLTISEVAQQGTSTYEEARRSETSAEDGRKVIVEMVASIQQVSTQMSDMSLQMNTLGSHGEQIGSVIKVIEDIA
EQTNLLALNAAIEAARAGEFGRGFAVVADEVRALAERTTKATQEVSGIIQSIQSGTQEAVTYTQDNCRLVEIGVEQSTGA
VSALEAIVSGAGNVQSMVNSIATAAEEQTAVTKEIAADITAISDISEQSLQLATRSSENTSGLNAKVAELEGLVGKFKLA
>Mature_560_residues
MWWPIYLSVRLYRPVFILGRCCVKLSVRKKLYLGFGSILAVLVTLVGIVSIEVIGAHESSDEIRLDDVPGTVTYLILIDE
AGDVYRDALGAVVQGGNALNDYRANKTQFSQAIEEAKRLESKGSEDHRRVQRIEELMGRFTQEFESKLVPMLNDETALLS
NIQQLRSLYESNLIPIENLLDQASESEIADTERALLTLTDSFITIERTIMVLTAVAIVFGCVIAFVLSSSITNRLTRVEQ
VARRVANGDLTAGDIVDDSGDELADLAQSINQMQKSLVDLLGSISSVTTQVQSVTGELSSISHDIVSGASAQADKATLIA
TAAEELSLTISEVAQQGTSTYEEARRSETSAEDGRKVIVEMVASIQQVSTQMSDMSLQMNTLGSHGEQIGSVIKVIEDIA
EQTNLLALNAAIEAARAGEFGRGFAVVADEVRALAERTTKATQEVSGIIQSIQSGTQEAVTYTQDNCRLVEIGVEQSTGA
VSALEAIVSGAGNVQSMVNSIATAAEEQTAVTKEIAADITAISDISEQSLQLATRSSENTSGLNAKVAELEGLVGKFKLA

Specific function: Mediates Taxis To The Sugars Ribose And Galactose VIa An Interaction With The Periplasmic Ribose- Or Galactose-Binding Proteins. Chemotactic-Signal Transducers Respond To Changes In The Concentration Of Attractants And Repellents In The Environment, Trans

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=346, Percent_Identity=29.1907514450867, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI2367378, Length=337, Percent_Identity=29.080118694362, Blast_Score=125, Evalue=9e-30,
Organism=Escherichia coli, GI1788195, Length=318, Percent_Identity=30.188679245283, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1788194, Length=315, Percent_Identity=30.1587301587302, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1789453, Length=394, Percent_Identity=26.3959390862944, Blast_Score=87, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 60104; Mature: 60104

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWWPIYLSVRLYRPVFILGRCCVKLSVRKKLYLGFGSILAVLVTLVGIVSIEVIGAHESS
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCC
DEIRLDDVPGTVTYLILIDEAGDVYRDALGAVVQGGNALNDYRANKTQFSQAIEEAKRLE
CCEEEECCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHH
SKGSEDHRRVQRIEELMGRFTQEFESKLVPMLNDETALLSNIQQLRSLYESNLIPIENLL
HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
DQASESEIADTERALLTLTDSFITIERTIMVLTAVAIVFGCVIAFVLSSSITNRLTRVEQ
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VARRVANGDLTAGDIVDDSGDELADLAQSINQMQKSLVDLLGSISSVTTQVQSVTGELSS
HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISHDIVSGASAQADKATLIATAAEELSLTISEVAQQGTSTYEEARRSETSAEDGRKVIVE
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHH
MVASIQQVSTQMSDMSLQMNTLGSHGEQIGSVIKVIEDIAEQTNLLALNAAIEAARAGEF
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCEEHHHHHHHHHHCCCC
GRGFAVVADEVRALAERTTKATQEVSGIIQSIQSGTQEAVTYTQDNCRLVEIGVEQSTGA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEECCCCEEEEECCCCCCCH
VSALEAIVSGAGNVQSMVNSIATAAEEQTAVTKEIAADITAISDISEQSLQLATRSSENT
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SGLNAKVAELEGLVGKFKLA
CCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MWWPIYLSVRLYRPVFILGRCCVKLSVRKKLYLGFGSILAVLVTLVGIVSIEVIGAHESS
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCC
DEIRLDDVPGTVTYLILIDEAGDVYRDALGAVVQGGNALNDYRANKTQFSQAIEEAKRLE
CCEEEECCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHH
SKGSEDHRRVQRIEELMGRFTQEFESKLVPMLNDETALLSNIQQLRSLYESNLIPIENLL
HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
DQASESEIADTERALLTLTDSFITIERTIMVLTAVAIVFGCVIAFVLSSSITNRLTRVEQ
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VARRVANGDLTAGDIVDDSGDELADLAQSINQMQKSLVDLLGSISSVTTQVQSVTGELSS
HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISHDIVSGASAQADKATLIATAAEELSLTISEVAQQGTSTYEEARRSETSAEDGRKVIVE
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHH
MVASIQQVSTQMSDMSLQMNTLGSHGEQIGSVIKVIEDIAEQTNLLALNAAIEAARAGEF
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCEEHHHHHHHHHHCCCC
GRGFAVVADEVRALAERTTKATQEVSGIIQSIQSGTQEAVTYTQDNCRLVEIGVEQSTGA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEECCCCEEEEECCCCCCCH
VSALEAIVSGAGNVQSMVNSIATAAEEQTAVTKEIAADITAISDISEQSLQLATRSSENT
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SGLNAKVAELEGLVGKFKLA
CCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1548224 [H]