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The map label for this gene is yocR [H]

Identifier: 218709961

GI number: 218709961

Start: 2125098

End: 2126531

Strand: Reverse

Name: yocR [H]

Synonym: VS_1980

Alternate gene names: 218709961

Gene position: 2126531-2125098 (Counterclockwise)

Preceding gene: 218709964

Following gene: 218709960

Centisome position: 64.45

GC content: 45.61

Gene sequence:

>1434_bases
GTGGCTACTAGTAATACAACCACTACACCCCGCGATACCTGGGGTTCGAAATTAGGATTCGTAATGGCTGCAGCAGGTTC
TGCTGTTGGCTTAGGTAACATCTGGAAATTCCCATACACAGCAGGTGAAAGTGGCGGCGGTGCATTCGTTGCAATTTATC
TGTTTTTTGTAATCTTCATCGGTTTTAGTGTGATGCTGACTGAATTTGCGATTGGCCGTCATACGCAAAAATCAGCAGTA
GGTGCATTTAAATCAACTGACCGTCGCTGGACGTTCGCTGGTGTTATTGGCGTAGTCAGTGGTTTACTTATCATGGGTTT
CTACCCTGTAGTAGGTGGCTGGTCTATCGCATACATCGGTAAAATTGCTGGTGGTCTACTAGACGCACCTGAAGCAATTG
GCGACAGCTTCGGTGGCTTTATCTCAAACCCAGTTCAGCCACTAATGTGGATGGGCCTATACCTACTACTTAACGTTGTC
ATCGTTATGAAGGGTATTTCTGGCGGTATTGAGAAAGCGGGTAAGATTCTGATGCCACTTCTTTTCATCATCCTTATCGT
GGTATCAATCAAAGGCCTAATGCTTCCGGGCGCGATGGCTGGTCTTGAATTCCTATTCAGCCCTGACTTCTCTAAAGTAG
ACAGCGGTGTAATCCTAGCCGCACTAGGTCAAGCATTCTTCTCACTATCTCTTGGTATGGGTTGTATGTTGACTTACGGT
TCTTACCTTAAGAAGAAAGAGAACCTAGTTCAAACTACAGCTATGGTTACGGCGATGGATACAGGCGTTGCTATCCTAGC
TGGTGTTGCAATGTTCCCTGCAATGTTCGCATTCGGTATGGAACCTGCAGCAGGTCCTGGTCTAGTATTCGTTGTTGTTC
CTCAGCTATTCGCTGAAATGGGCGGCGTAGTTGGTCTTCTATTTGCTCTTATGTTCTTCGTTGGTCTAAGTGTTGCGGCA
CTGACTTCTTCAGTATCTCTACTTGAAGTTGTTGTATCGTACCTAATCGATGAGAAAGGCATGAAGCGTGTAACAGCTGT
ACTGTCTGCAAGTGTCGTAATGGCGATTCTATGTATCTTCGCTTCTCTATCACTTGGCGGTTTCGGTCCAACACTGTTTG
GTACTGGTGCATTTGATATCTTCGACTTACTAACGGATAAAATCTTCCTAGCAGTTGGCGGTATGTTGGTATGTATCTTC
GCTGGTTGGAGACTAAACCGTGCTGACCTAGAGAAAGAAATCACTAACGACGGTGAAGTATCTTTCCCACTATTCGGTCT
ATGGTACACACTCGTTAAGTACATCATCCCAGTAGCTATCGCTATCGTAGCGTTCATGGGCATCTCTTCTGGCTTCGACA
GCGGTAAAGGTGCAATCATGCTACTAGGTATTGGTATCATTGCCGGCTCTGCGCTTATTTCTAAGAAGCTATAA

Upstream 100 bases:

>100_bases
AAATCTTTTAATGGTGTAAATTATTATATACACCTTATCTTTTAATGACGCCACACAAAGCAAAATACAACATCACATAA
CACAAAAGTTTGGAGTAAAC

Downstream 100 bases:

>100_bases
TTCTTAGAAACTCTAATCGCAAACTAAAGTTAATTGATAAGCGGGAGCCATTGGCTCCCGTTTTTTATGCGACGTACTTA
TTGTTTTTCGAGAAATAAAA

Product: sodium-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 477; Mature: 476

Protein sequence:

>477_residues
MATSNTTTTPRDTWGSKLGFVMAAAGSAVGLGNIWKFPYTAGESGGGAFVAIYLFFVIFIGFSVMLTEFAIGRHTQKSAV
GAFKSTDRRWTFAGVIGVVSGLLIMGFYPVVGGWSIAYIGKIAGGLLDAPEAIGDSFGGFISNPVQPLMWMGLYLLLNVV
IVMKGISGGIEKAGKILMPLLFIILIVVSIKGLMLPGAMAGLEFLFSPDFSKVDSGVILAALGQAFFSLSLGMGCMLTYG
SYLKKKENLVQTTAMVTAMDTGVAILAGVAMFPAMFAFGMEPAAGPGLVFVVVPQLFAEMGGVVGLLFALMFFVGLSVAA
LTSSVSLLEVVVSYLIDEKGMKRVTAVLSASVVMAILCIFASLSLGGFGPTLFGTGAFDIFDLLTDKIFLAVGGMLVCIF
AGWRLNRADLEKEITNDGEVSFPLFGLWYTLVKYIIPVAIAIVAFMGISSGFDSGKGAIMLLGIGIIAGSALISKKL

Sequences:

>Translated_477_residues
MATSNTTTTPRDTWGSKLGFVMAAAGSAVGLGNIWKFPYTAGESGGGAFVAIYLFFVIFIGFSVMLTEFAIGRHTQKSAV
GAFKSTDRRWTFAGVIGVVSGLLIMGFYPVVGGWSIAYIGKIAGGLLDAPEAIGDSFGGFISNPVQPLMWMGLYLLLNVV
IVMKGISGGIEKAGKILMPLLFIILIVVSIKGLMLPGAMAGLEFLFSPDFSKVDSGVILAALGQAFFSLSLGMGCMLTYG
SYLKKKENLVQTTAMVTAMDTGVAILAGVAMFPAMFAFGMEPAAGPGLVFVVVPQLFAEMGGVVGLLFALMFFVGLSVAA
LTSSVSLLEVVVSYLIDEKGMKRVTAVLSASVVMAILCIFASLSLGGFGPTLFGTGAFDIFDLLTDKIFLAVGGMLVCIF
AGWRLNRADLEKEITNDGEVSFPLFGLWYTLVKYIIPVAIAIVAFMGISSGFDSGKGAIMLLGIGIIAGSALISKKL
>Mature_476_residues
ATSNTTTTPRDTWGSKLGFVMAAAGSAVGLGNIWKFPYTAGESGGGAFVAIYLFFVIFIGFSVMLTEFAIGRHTQKSAVG
AFKSTDRRWTFAGVIGVVSGLLIMGFYPVVGGWSIAYIGKIAGGLLDAPEAIGDSFGGFISNPVQPLMWMGLYLLLNVVI
VMKGISGGIEKAGKILMPLLFIILIVVSIKGLMLPGAMAGLEFLFSPDFSKVDSGVILAALGQAFFSLSLGMGCMLTYGS
YLKKKENLVQTTAMVTAMDTGVAILAGVAMFPAMFAFGMEPAAGPGLVFVVVPQLFAEMGGVVGLLFALMFFVGLSVAAL
TSSVSLLEVVVSYLIDEKGMKRVTAVLSASVVMAILCIFASLSLGGFGPTLFGTGAFDIFDLLTDKIFLAVGGMLVCIFA
GWRLNRADLEKEITNDGEVSFPLFGLWYTLVKYIIPVAIAIVAFMGISSGFDSGKGAIMLLGIGIIAGSALISKKL

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI21361581, Length=409, Percent_Identity=28.361858190709, Blast_Score=140, Evalue=3e-33,
Organism=Homo sapiens, GI188528618, Length=409, Percent_Identity=26.4058679706601, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI289191351, Length=421, Percent_Identity=25.8907363420428, Blast_Score=127, Evalue=3e-29,
Organism=Homo sapiens, GI4557046, Length=421, Percent_Identity=25.8907363420428, Blast_Score=127, Evalue=3e-29,
Organism=Homo sapiens, GI289191377, Length=421, Percent_Identity=25.8907363420428, Blast_Score=126, Evalue=4e-29,
Organism=Homo sapiens, GI7657587, Length=399, Percent_Identity=25.8145363408521, Blast_Score=125, Evalue=9e-29,
Organism=Homo sapiens, GI4507043, Length=410, Percent_Identity=25.609756097561, Blast_Score=125, Evalue=1e-28,
Organism=Homo sapiens, GI4507041, Length=418, Percent_Identity=25.1196172248804, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI58219014, Length=295, Percent_Identity=30.1694915254237, Blast_Score=119, Evalue=6e-27,
Organism=Homo sapiens, GI171184408, Length=429, Percent_Identity=25.8741258741259, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI171184406, Length=429, Percent_Identity=25.8741258741259, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI171184404, Length=429, Percent_Identity=25.8741258741259, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI197276623, Length=336, Percent_Identity=27.3809523809524, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI54607094, Length=336, Percent_Identity=27.3809523809524, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI11181770, Length=291, Percent_Identity=28.1786941580756, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI92859670, Length=407, Percent_Identity=26.044226044226, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI33354281, Length=295, Percent_Identity=26.1016949152542, Blast_Score=110, Evalue=4e-24,
Organism=Homo sapiens, GI194018524, Length=295, Percent_Identity=27.7966101694915, Blast_Score=109, Evalue=4e-24,
Organism=Homo sapiens, GI300360519, Length=369, Percent_Identity=26.5582655826558, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI67782317, Length=412, Percent_Identity=24.2718446601942, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI67782313, Length=410, Percent_Identity=24.390243902439, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI67782315, Length=410, Percent_Identity=24.390243902439, Blast_Score=103, Evalue=5e-22,
Organism=Homo sapiens, GI51468073, Length=293, Percent_Identity=25.2559726962457, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI5032097, Length=344, Percent_Identity=24.7093023255814, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI12408638, Length=265, Percent_Identity=23.3962264150943, Blast_Score=84, Evalue=4e-16,
Organism=Homo sapiens, GI218563756, Length=344, Percent_Identity=24.7093023255814, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI134304856, Length=157, Percent_Identity=35.6687898089172, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI21361693, Length=205, Percent_Identity=25.8536585365854, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI289191353, Length=230, Percent_Identity=26.9565217391304, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI197276625, Length=109, Percent_Identity=34.8623853211009, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17554804, Length=468, Percent_Identity=26.4957264957265, Blast_Score=124, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI71995588, Length=416, Percent_Identity=25.2403846153846, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI25146584, Length=420, Percent_Identity=24.5238095238095, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17569475, Length=402, Percent_Identity=24.1293532338308, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI133952791, Length=250, Percent_Identity=28.8, Blast_Score=85, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI212642127, Length=283, Percent_Identity=27.208480565371, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI71998244, Length=286, Percent_Identity=26.5734265734266, Blast_Score=75, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17542050, Length=141, Percent_Identity=29.7872340425532, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17555248, Length=225, Percent_Identity=27.1111111111111, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17136952, Length=413, Percent_Identity=26.634382566586, Blast_Score=140, Evalue=2e-33,
Organism=Drosophila melanogaster, GI24762620, Length=414, Percent_Identity=27.0531400966184, Blast_Score=139, Evalue=5e-33,
Organism=Drosophila melanogaster, GI281364394, Length=413, Percent_Identity=26.8765133171913, Blast_Score=137, Evalue=2e-32,
Organism=Drosophila melanogaster, GI28574704, Length=413, Percent_Identity=26.8765133171913, Blast_Score=137, Evalue=2e-32,
Organism=Drosophila melanogaster, GI17136950, Length=413, Percent_Identity=26.8765133171913, Blast_Score=137, Evalue=2e-32,
Organism=Drosophila melanogaster, GI28574702, Length=413, Percent_Identity=26.8765133171913, Blast_Score=137, Evalue=2e-32,
Organism=Drosophila melanogaster, GI24661428, Length=394, Percent_Identity=26.1421319796954, Blast_Score=119, Evalue=6e-27,
Organism=Drosophila melanogaster, GI24639514, Length=392, Percent_Identity=27.0408163265306, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI221329674, Length=392, Percent_Identity=27.0408163265306, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI45551088, Length=419, Percent_Identity=26.491646778043, Blast_Score=116, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24652942, Length=419, Percent_Identity=26.491646778043, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI281365034, Length=386, Percent_Identity=25.9067357512953, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24639516, Length=293, Percent_Identity=28.6689419795222, Blast_Score=112, Evalue=7e-25,
Organism=Drosophila melanogaster, GI281363702, Length=385, Percent_Identity=25.1948051948052, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24655079, Length=292, Percent_Identity=28.0821917808219, Blast_Score=108, Evalue=7e-24,
Organism=Drosophila melanogaster, GI45550877, Length=449, Percent_Identity=24.4988864142539, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24654186, Length=531, Percent_Identity=22.7871939736347, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24582567, Length=388, Percent_Identity=26.2886597938144, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI45551183, Length=459, Percent_Identity=23.9651416122004, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24639853, Length=422, Percent_Identity=25.5924170616114, Blast_Score=96, Evalue=6e-20,
Organism=Drosophila melanogaster, GI281363700, Length=342, Percent_Identity=26.0233918128655, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI19921936, Length=204, Percent_Identity=28.4313725490196, Blast_Score=79, Evalue=8e-15,
Organism=Drosophila melanogaster, GI281364136, Length=400, Percent_Identity=22.25, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI19921352, Length=200, Percent_Identity=27, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24584353, Length=200, Percent_Identity=27, Blast_Score=73, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 49954; Mature: 49823

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATSNTTTTPRDTWGSKLGFVMAAAGSAVGLGNIWKFPYTAGESGGGAFVAIYLFFVIFI
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
GFSVMLTEFAIGRHTQKSAVGAFKSTDRRWTFAGVIGVVSGLLIMGFYPVVGGWSIAYIG
HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
KIAGGLLDAPEAIGDSFGGFISNPVQPLMWMGLYLLLNVVIVMKGISGGIEKAGKILMPL
HHHCCCCCCCHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LFIILIVVSIKGLMLPGAMAGLEFLFSPDFSKVDSGVILAALGQAFFSLSLGMGCMLTYG
HHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHH
SYLKKKENLVQTTAMVTAMDTGVAILAGVAMFPAMFAFGMEPAAGPGLVFVVVPQLFAEM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHH
GGVVGLLFALMFFVGLSVAALTSSVSLLEVVVSYLIDEKGMKRVTAVLSASVVMAILCIF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
ASLSLGGFGPTLFGTGAFDIFDLLTDKIFLAVGGMLVCIFAGWRLNRADLEKEITNDGEV
HHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCC
SFPLFGLWYTLVKYIIPVAIAIVAFMGISSGFDSGKGAIMLLGIGIIAGSALISKKL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]