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The map label for this gene is ybbK [C]

Identifier: 218709953

GI number: 218709953

Start: 2116060

End: 2116857

Strand: Reverse

Name: ybbK [C]

Synonym: VS_1972

Alternate gene names: 218709953

Gene position: 2116857-2116060 (Counterclockwise)

Preceding gene: 218709954

Following gene: 218709946

Centisome position: 64.16

GC content: 46.49

Gene sequence:

>798_bases
ATGTTTATACACACTATAGGTATTGTCATTGTGCTCGTTATCTTGCTGATAGCCAGCATGTTTAGAGTTCTGCGCGAGTA
CGAGCGGGCAGTGGTGTTCTTCCTTGGGCGCTTTTATGGCGTTAAAGGGCCGGGCTTGATTATCATCATTCCTTTCATCC
AACAAATTGTGAGAGTGGATCTACGAACTATCGTTTTGGATGTGCCAACACAAGATTTGATCACCAGAGATAATGTGTCT
GTGAAGGTCAATGCTGTGGTCTATTTTCGAGTGCTCGATCCGAAGATGGCGATTAACAATGTTGAAAATTATCTCGAAGC
GACCAGTCAGCTCTCCCAAACCACCTTACGGTCGGTATTAGGTCAGCATGAGTTAGATGAACTGTTGTCTGAACGTGAAG
AGCTTAATAGAGACTTACAAGCGATACTGGATCAACACACCGATAACTGGGGGATCAAGATTGCCAATGTCGAGATCAAG
CATGTTGATCTGGATGACAGTATGGTGCGAGCTCTTGCTAAACAAGCGGAAGCCGAGCGTTCTCGTCGAGCTAAGGTAAT
ACATGCAACAGGTGAGCTTGAAGCATCCTCAAAGTTACGGGAAGCGGCCGAAGTGCTGAATCAAGCGCCCAACGCCATTC
AATTGCGATATATGCAAACGCTAACCGAGGTGGCTAACGAAAGAACCTCCACCATCATCTTCCCAATGCCCATCGATCTA
GTGGAGAAGATAACCGACCCGATCAAAGCGACGCTCAATGAGGCTGCGATTAAGAAAGCGATGAAAGCTGATGAGTAG

Upstream 100 bases:

>100_bases
GCCCGATGAGACATCATCGAAATCTAGCTAGCGCGACATGCTAGAACAAACTTGATTGAATTATTTATTGCTTAACCATC
GTTACCATTAGGGGGCGGTT

Downstream 100 bases:

>100_bases
TTAGCGTGAATGACGAGTAATAAAAAAGGCTCCACAGTTGTGGAGCCTTTTAGTATTTGAATCGCTGGTCCTATTTAATG
ACCAATGATATTACTAGCCG

Product: putative stomatin-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MFIHTIGIVIVLVILLIASMFRVLREYERAVVFFLGRFYGVKGPGLIIIIPFIQQIVRVDLRTIVLDVPTQDLITRDNVS
VKVNAVVYFRVLDPKMAINNVENYLEATSQLSQTTLRSVLGQHELDELLSEREELNRDLQAILDQHTDNWGIKIANVEIK
HVDLDDSMVRALAKQAEAERSRRAKVIHATGELEASSKLREAAEVLNQAPNAIQLRYMQTLTEVANERTSTIIFPMPIDL
VEKITDPIKATLNEAAIKKAMKADE

Sequences:

>Translated_265_residues
MFIHTIGIVIVLVILLIASMFRVLREYERAVVFFLGRFYGVKGPGLIIIIPFIQQIVRVDLRTIVLDVPTQDLITRDNVS
VKVNAVVYFRVLDPKMAINNVENYLEATSQLSQTTLRSVLGQHELDELLSEREELNRDLQAILDQHTDNWGIKIANVEIK
HVDLDDSMVRALAKQAEAERSRRAKVIHATGELEASSKLREAAEVLNQAPNAIQLRYMQTLTEVANERTSTIIFPMPIDL
VEKITDPIKATLNEAAIKKAMKADE
>Mature_265_residues
MFIHTIGIVIVLVILLIASMFRVLREYERAVVFFLGRFYGVKGPGLIIIIPFIQQIVRVDLRTIVLDVPTQDLITRDNVS
VKVNAVVYFRVLDPKMAINNVENYLEATSQLSQTTLRSVLGQHELDELLSEREELNRDLQAILDQHTDNWGIKIANVEIK
HVDLDDSMVRALAKQAEAERSRRAKVIHATGELEASSKLREAAEVLNQAPNAIQLRYMQTLTEVANERTSTIIFPMPIDL
VEKITDPIKATLNEAAIKKAMKADE

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI38016911, Length=225, Percent_Identity=49.3333333333333, Blast_Score=215, Evalue=3e-56,
Organism=Homo sapiens, GI221316744, Length=246, Percent_Identity=45.1219512195122, Blast_Score=209, Evalue=2e-54,
Organism=Homo sapiens, GI21686995, Length=246, Percent_Identity=45.1219512195122, Blast_Score=209, Evalue=2e-54,
Organism=Homo sapiens, GI7657615, Length=246, Percent_Identity=34.5528455284553, Blast_Score=159, Evalue=2e-39,
Organism=Homo sapiens, GI7305503, Length=178, Percent_Identity=38.2022471910112, Blast_Score=125, Evalue=6e-29,
Organism=Homo sapiens, GI20149563, Length=160, Percent_Identity=31.875, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI38016907, Length=60, Percent_Identity=55, Blast_Score=75, Evalue=5e-14,
Organism=Escherichia coli, GI1786697, Length=187, Percent_Identity=33.6898395721925, Blast_Score=126, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17569493, Length=249, Percent_Identity=44.578313253012, Blast_Score=213, Evalue=7e-56,
Organism=Caenorhabditis elegans, GI193209764, Length=249, Percent_Identity=44.578313253012, Blast_Score=212, Evalue=1e-55,
Organism=Caenorhabditis elegans, GI25153583, Length=237, Percent_Identity=47.2573839662447, Blast_Score=207, Evalue=5e-54,
Organism=Caenorhabditis elegans, GI71987612, Length=237, Percent_Identity=47.2573839662447, Blast_Score=207, Evalue=5e-54,
Organism=Caenorhabditis elegans, GI71987621, Length=237, Percent_Identity=47.2573839662447, Blast_Score=206, Evalue=9e-54,
Organism=Caenorhabditis elegans, GI17569499, Length=245, Percent_Identity=45.3061224489796, Blast_Score=203, Evalue=9e-53,
Organism=Caenorhabditis elegans, GI17570161, Length=235, Percent_Identity=44.2553191489362, Blast_Score=198, Evalue=3e-51,
Organism=Caenorhabditis elegans, GI193210507, Length=235, Percent_Identity=44.2553191489362, Blast_Score=198, Evalue=3e-51,
Organism=Caenorhabditis elegans, GI17570459, Length=248, Percent_Identity=43.1451612903226, Blast_Score=198, Evalue=3e-51,
Organism=Caenorhabditis elegans, GI17569497, Length=247, Percent_Identity=40.080971659919, Blast_Score=197, Evalue=4e-51,
Organism=Caenorhabditis elegans, GI32566490, Length=231, Percent_Identity=46.3203463203463, Blast_Score=191, Evalue=3e-49,
Organism=Caenorhabditis elegans, GI71989948, Length=223, Percent_Identity=45.2914798206278, Blast_Score=184, Evalue=3e-47,
Organism=Caenorhabditis elegans, GI71989955, Length=177, Percent_Identity=46.3276836158192, Blast_Score=145, Evalue=3e-35,
Organism=Caenorhabditis elegans, GI71989963, Length=116, Percent_Identity=48.2758620689655, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI32564147, Length=175, Percent_Identity=36, Blast_Score=113, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17542664, Length=168, Percent_Identity=25, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI45556022, Length=242, Percent_Identity=47.1074380165289, Blast_Score=216, Evalue=2e-56,
Organism=Drosophila melanogaster, GI24657857, Length=239, Percent_Identity=49.7907949790795, Blast_Score=214, Evalue=4e-56,
Organism=Drosophila melanogaster, GI281365664, Length=239, Percent_Identity=49.7907949790795, Blast_Score=214, Evalue=4e-56,
Organism=Drosophila melanogaster, GI62484448, Length=239, Percent_Identity=49.7907949790795, Blast_Score=214, Evalue=5e-56,
Organism=Drosophila melanogaster, GI62484274, Length=239, Percent_Identity=49.7907949790795, Blast_Score=214, Evalue=7e-56,
Organism=Drosophila melanogaster, GI18860517, Length=240, Percent_Identity=46.6666666666667, Blast_Score=213, Evalue=1e-55,
Organism=Drosophila melanogaster, GI28573263, Length=241, Percent_Identity=41.49377593361, Blast_Score=193, Evalue=1e-49,
Organism=Drosophila melanogaster, GI281361633, Length=242, Percent_Identity=39.6694214876033, Blast_Score=186, Evalue=1e-47,
Organism=Drosophila melanogaster, GI281361631, Length=242, Percent_Identity=39.6694214876033, Blast_Score=186, Evalue=2e-47,
Organism=Drosophila melanogaster, GI21356845, Length=246, Percent_Identity=36.1788617886179, Blast_Score=183, Evalue=1e-46,
Organism=Drosophila melanogaster, GI281361635, Length=182, Percent_Identity=40.1098901098901, Blast_Score=144, Evalue=5e-35,
Organism=Drosophila melanogaster, GI45550506, Length=171, Percent_Identity=38.0116959064327, Blast_Score=119, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 29952; Mature: 29952

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIHTIGIVIVLVILLIASMFRVLREYERAVVFFLGRFYGVKGPGLIIIIPFIQQIVRVD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHH
LRTIVLDVPTQDLITRDNVSVKVNAVVYFRVLDPKMAINNVENYLEATSQLSQTTLRSVL
HHHHEEECCCHHHHCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
GQHELDELLSEREELNRDLQAILDQHTDNWGIKIANVEIKHVDLDDSMVRALAKQAEAER
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHH
SRRAKVIHATGELEASSKLREAAEVLNQAPNAIQLRYMQTLTEVANERTSTIIFPMPIDL
HHHHEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHH
VEKITDPIKATLNEAAIKKAMKADE
HHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFIHTIGIVIVLVILLIASMFRVLREYERAVVFFLGRFYGVKGPGLIIIIPFIQQIVRVD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHH
LRTIVLDVPTQDLITRDNVSVKVNAVVYFRVLDPKMAINNVENYLEATSQLSQTTLRSVL
HHHHEEECCCHHHHCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
GQHELDELLSEREELNRDLQAILDQHTDNWGIKIANVEIKHVDLDDSMVRALAKQAEAER
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHH
SRRAKVIHATGELEASSKLREAAEVLNQAPNAIQLRYMQTLTEVANERTSTIIFPMPIDL
HHHHEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHH
VEKITDPIKATLNEAAIKKAMKADE
HHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]