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The map label for this gene is 218709943

Identifier: 218709943

GI number: 218709943

Start: 2105308

End: 2105799

Strand: Direct

Name: 218709943

Synonym: VS_1961

Alternate gene names: NA

Gene position: 2105308-2105799 (Clockwise)

Preceding gene: 218709942

Following gene: 218709947

Centisome position: 63.81

GC content: 44.72

Gene sequence:

>492_bases
ATGACCAAAGCAAAGACAGATACCCTATCCAAAGGCTATGCCTGTGTTGGATTAGTAAATCCCAAAACCCCTGAAAATGT
TGGCTCAGTAATGCGAGCAGCTGGTTGCTATGGAGCAAACTCTGTATTTTATACTGGCACCCGTTATGACCACGCTCGAC
AGTTTCATACCGACACCAAAGAAAAGCACCTTGAGTTGCCATTAATTGGTGTTGAAGATCTTAAAGATATTATTCCTGTT
GGCTGCGTGCCCATCGCGGTTGATTTGATAGAAGGCGCCAAGCCTCTGCCTGATTATAAGCACCCACCTCGTGCTTTTTA
TATCTTCGGCCCTGAAGATGGGACTCTGAAAAAAGAGATCACAGACTTCTGTCGTGAAACCATCTACGTTCCGACTAATG
GCTGCATGAACCTTGCTGCTGCGGTTAATGTTATTCTGTATGACCGCATGGCGAAGGGTGACAATTTCTCTAATCATTTG
AAAGTGACCTAA

Upstream 100 bases:

>100_bases
AACGCGACTAGGCTCTTCTTAAACCAGCTCAGAGTACTGAGCTGGTTTTCTTACGACTTCATAGCCTCATCACTTTACCA
AACTGCAACTCTACAAAATT

Downstream 100 bases:

>100_bases
TATCAATCGTAGCGAGTCAGCCGAGTTGGCTAAGCACTTCTACCTGATCAAGCACTCCCACATGATTTGAACTGCGCCAT
ATTCAAGACATAAAAAAACC

Product: RNA methyltransferase

Products: NA

Alternate protein names: RNA Methyltransferase; 23S RRNA Methyltransferase; RNA Methyltransferase TrmH Family; Cold-Shock RNA Methyltransferase; rRNA Methylase; TrmH Family RNA Methyltransferase; TRNA/RRNA MethyltransferaU; rRNA Methyltransferase; SpoU RRNA Methylase Family Protein; SpoU Class RRNA Methylase

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MTKAKTDTLSKGYACVGLVNPKTPENVGSVMRAAGCYGANSVFYTGTRYDHARQFHTDTKEKHLELPLIGVEDLKDIIPV
GCVPIAVDLIEGAKPLPDYKHPPRAFYIFGPEDGTLKKEITDFCRETIYVPTNGCMNLAAAVNVILYDRMAKGDNFSNHL
KVT

Sequences:

>Translated_163_residues
MTKAKTDTLSKGYACVGLVNPKTPENVGSVMRAAGCYGANSVFYTGTRYDHARQFHTDTKEKHLELPLIGVEDLKDIIPV
GCVPIAVDLIEGAKPLPDYKHPPRAFYIFGPEDGTLKKEITDFCRETIYVPTNGCMNLAAAVNVILYDRMAKGDNFSNHL
KVT
>Mature_162_residues
TKAKTDTLSKGYACVGLVNPKTPENVGSVMRAAGCYGANSVFYTGTRYDHARQFHTDTKEKHLELPLIGVEDLKDIIPVG
CVPIAVDLIEGAKPLPDYKHPPRAFYIFGPEDGTLKKEITDFCRETIYVPTNGCMNLAAAVNVILYDRMAKGDNFSNHLK
VT

Specific function: Unknown

COG id: COG0219

COG function: function code J; Predicted rRNA methylase (SpoU class)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17938; Mature: 17807

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: PS00599 AA_TRANSFER_CLASS_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKAKTDTLSKGYACVGLVNPKTPENVGSVMRAAGCYGANSVFYTGTRYDHARQFHTDTK
CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHCCCCC
EKHLELPLIGVEDLKDIIPVGCVPIAVDLIEGAKPLPDYKHPPRAFYIFGPEDGTLKKEI
HHEECCCEECHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHH
TDFCRETIYVPTNGCMNLAAAVNVILYDRMAKGDNFSNHLKVT
HHHHHHEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEC
>Mature Secondary Structure 
TKAKTDTLSKGYACVGLVNPKTPENVGSVMRAAGCYGANSVFYTGTRYDHARQFHTDTK
CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHCCCCC
EKHLELPLIGVEDLKDIIPVGCVPIAVDLIEGAKPLPDYKHPPRAFYIFGPEDGTLKKEI
HHEECCCEECHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHH
TDFCRETIYVPTNGCMNLAAAVNVILYDRMAKGDNFSNHLKVT
HHHHHHEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA