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The map label for this gene is yciU [C]

Identifier: 218709942

GI number: 218709942

Start: 2104889

End: 2105218

Strand: Direct

Name: yciU [C]

Synonym: VS_1960

Alternate gene names: 218709942

Gene position: 2104889-2105218 (Clockwise)

Preceding gene: 218709941

Following gene: 218709943

Centisome position: 63.8

GC content: 45.76

Gene sequence:

>330_bases
ATGACCGAAGCTAACGACCTAATGTCTTACGACGACGCAATTGACACTGCATACGACATCTTTCTAGAGATGGCTGCTGA
TAATCTTGAACCTGCAGACGTGATCTTATTCACGGCTCAGTTTGAAGATCGTGGCGCTGCAGAACTTGTTGAAACTGGTG
ACGATTGGGTTGAACATGTTGGCTTTGAAGTCGACAAAGAGATCTACGCTGAAGTACGCATTGGTCTTGTAAATGAAGCT
GATGATGTCTTAGATGACGTATTCGCTCGTCTACTGATCAGCCGTGACCCTGAACACAAGTTCTGTCACATGTTGTGGAA
ACGCGACTAG

Upstream 100 bases:

>100_bases
CTTACTGTTCAAGTTCCTGAGTACATTGCAACTGGCGACAAAGTTGTTGTGAACACAGCTGAACGTAAATACATGAACCG
CGCAAGCTAAGATACTGATT

Downstream 100 bases:

>100_bases
GCTCTTCTTAAACCAGCTCAGAGTACTGAGCTGGTTTTCTTACGACTTCATAGCCTCATCACTTTACCAAACTGCAACTC
TACAAAATTATGACCAAAGC

Product: dsDNA-mimic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 108

Protein sequence:

>109_residues
MTEANDLMSYDDAIDTAYDIFLEMAADNLEPADVILFTAQFEDRGAAELVETGDDWVEHVGFEVDKEIYAEVRIGLVNEA
DDVLDDVFARLLISRDPEHKFCHMLWKRD

Sequences:

>Translated_109_residues
MTEANDLMSYDDAIDTAYDIFLEMAADNLEPADVILFTAQFEDRGAAELVETGDDWVEHVGFEVDKEIYAEVRIGLVNEA
DDVLDDVFARLLISRDPEHKFCHMLWKRD
>Mature_108_residues
TEANDLMSYDDAIDTAYDIFLEMAADNLEPADVILFTAQFEDRGAAELVETGDDWVEHVGFEVDKEIYAEVRIGLVNEAD
DVLDDVFARLLISRDPEHKFCHMLWKRD

Specific function: Unknown

COG id: COG3099

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0263 family [H]

Homologues:

Organism=Escherichia coli, GI87081860, Length=103, Percent_Identity=51.4563106796116, Blast_Score=120, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007376
- ProDom:   PD020447 [H]

Pfam domain/function: PF04269 DUF440 [H]

EC number: NA

Molecular weight: Translated: 12501; Mature: 12370

Theoretical pI: Translated: 3.79; Mature: 3.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEANDLMSYDDAIDTAYDIFLEMAADNLEPADVILFTAQFEDRGAAELVETGDDWVEHV
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHCCHHHHHHC
GFEVDKEIYAEVRIGLVNEADDVLDDVFARLLISRDPEHKFCHMLWKRD
CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
TEANDLMSYDDAIDTAYDIFLEMAADNLEPADVILFTAQFEDRGAAELVETGDDWVEHV
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHCCHHHHHHC
GFEVDKEIYAEVRIGLVNEADDVLDDVFARLLISRDPEHKFCHMLWKRD
CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]