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The map label for this gene is ycbB [H]

Identifier: 218709906

GI number: 218709906

Start: 2062213

End: 2063769

Strand: Reverse

Name: ycbB [H]

Synonym: VS_1919

Alternate gene names: 218709906

Gene position: 2063769-2062213 (Counterclockwise)

Preceding gene: 218709907

Following gene: 218709905

Centisome position: 62.55

GC content: 43.93

Gene sequence:

>1557_bases
TTGGTGATGGGGTTAAGCATGTTAGCAAAATACTTCTGTGGATTATTGGTGTTAGTTTCTGTGCATGCATGGAGCTATAC
GAGTTCTGACGAGAGCCGATTTATTCCGGCTGATTCAGAGCTCTCTTTTATGCTGATTTATCCAGAGCTTACCCAAAGTA
TTTATCAAGACTCATCTCTTCCAATTTTGTGGGATTCGCCTGAACTTGTTAAGGCGTTTGAATTTCAATTGTCGCTTTTA
GAACAAGCACAAATGGCGCCTCTTTTTGATCGTCAGTTAAAACAAATCCGCCAGTATCAATCTCGTGGTCAATGGCAAGA
ATTGGATATCTTGTTAACCGACACCTTTATCTATTACCTAAGCTATATTGAGAATGCACCACTTGCCGGTAAAGAGTGGT
ATTTCTCGGGCAAGCTGCATTCCAAGTTGCCTGCGCCTTCTCCACATATCCTGATGAGATTGAAAAGCAGTGTCACCAAC
GATTACTTATTAGAAATGGTATTGTCCTATGCGCCGCCTGTTGGGGATTTTGACCAATTCAAGGCGACCTACTCCGTGCT
AGAAACTGCGTCTGAACTCAATATAGAGCGATACAGACAGAAAGGATTGAAACGCTTAGGTGACCCGCTTTCAGACAAAC
CTATTCTTGTTGAGCGCATTGCTTTGGTTGGTGTTGATACCTCGATGATCGCGGTCGATTTCCCTGTATTTGACCAAGAT
CTGCAAACAGCGATTAAGTCTTTTCAGCGAATGCACGGCCTTACAGACGATGGGATCGTTGGGCCGGATACGATCAAATG
GATCAACATGAGCTTTGATGAACGATTGACTTCGCTGGCTCTCAATGCCGAACGTGTTCGTTTGTGGCCAAGAGACAGAG
ACTCTCTCATCGTCGTCAATGTCCCTAGTTTTGATATGAAGTATTGGGAAGATGGTGAAGAGGTCTTTGAGTCCAAAGTT
GTCGTGGGCAGAAAGTCGCGAAAAACACCGCTTTTAGAGATAAACCTAGATTCGGTTATCTTAAATCCTACTTGGAACGT
ACCATGGAAAATCATGGTCAAAGACATCTTGCCTAAAGTAAAAGCGGATGAAAGCTACCTAGAGACACACAACTTCCAAG
TGATTGATGGTTGGCGCACCATGGAAACCGTCGACACCACAGATATCGATTGGCAGACCATCAATTTCAATTCGTTCCCA
TATCGAATGCGTCAACAGGCAGGCTCACGTAATGCACTAGGTTTGTACAAGTTCAACACACCCAACAAGCGAGCTATCTA
TCTGCACGATACGCCAAGTAAAGGCCTGTTTAATGATGACTTCCGTGCTTACAGTTCAGGTTGTATACGTGTCGAACATG
CAGAGGAATTGGCTGAATTGTTGTTTGCCACCAAGGTAAGGAAAGTACCTAACCAAAGTAACGATCTTGCTCCTAATACC
AAGGTTCGTCTCAAGAAGCGAATCCCTGTGCATATCATCTATCAAACCGTGCTGTTTGAAGAAGGGGGCATACAGTATCG
TGGTGACATCTACCAATATGATAAAGAGGGTGGTTAA

Upstream 100 bases:

>100_bases
ATCGGTCCAGTGGGATAACCACTGGAGTGCAATCTAGTTCATAAAACTCCTTAAAAAATAACATGCTTACTCCTATTTCT
TTGCCATACTTATGAGATGA

Downstream 100 bases:

>100_bases
CCATCATTGAAGCCAATAAGGGTGATCTTGACCAAAAAATGACAACCAAGCTTCTATTGATAAAATTATAATGTGGATCA
ATAACTAACCGTGCAAAGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 518; Mature: 518

Protein sequence:

>518_residues
MVMGLSMLAKYFCGLLVLVSVHAWSYTSSDESRFIPADSELSFMLIYPELTQSIYQDSSLPILWDSPELVKAFEFQLSLL
EQAQMAPLFDRQLKQIRQYQSRGQWQELDILLTDTFIYYLSYIENAPLAGKEWYFSGKLHSKLPAPSPHILMRLKSSVTN
DYLLEMVLSYAPPVGDFDQFKATYSVLETASELNIERYRQKGLKRLGDPLSDKPILVERIALVGVDTSMIAVDFPVFDQD
LQTAIKSFQRMHGLTDDGIVGPDTIKWINMSFDERLTSLALNAERVRLWPRDRDSLIVVNVPSFDMKYWEDGEEVFESKV
VVGRKSRKTPLLEINLDSVILNPTWNVPWKIMVKDILPKVKADESYLETHNFQVIDGWRTMETVDTTDIDWQTINFNSFP
YRMRQQAGSRNALGLYKFNTPNKRAIYLHDTPSKGLFNDDFRAYSSGCIRVEHAEELAELLFATKVRKVPNQSNDLAPNT
KVRLKKRIPVHIIYQTVLFEEGGIQYRGDIYQYDKEGG

Sequences:

>Translated_518_residues
MVMGLSMLAKYFCGLLVLVSVHAWSYTSSDESRFIPADSELSFMLIYPELTQSIYQDSSLPILWDSPELVKAFEFQLSLL
EQAQMAPLFDRQLKQIRQYQSRGQWQELDILLTDTFIYYLSYIENAPLAGKEWYFSGKLHSKLPAPSPHILMRLKSSVTN
DYLLEMVLSYAPPVGDFDQFKATYSVLETASELNIERYRQKGLKRLGDPLSDKPILVERIALVGVDTSMIAVDFPVFDQD
LQTAIKSFQRMHGLTDDGIVGPDTIKWINMSFDERLTSLALNAERVRLWPRDRDSLIVVNVPSFDMKYWEDGEEVFESKV
VVGRKSRKTPLLEINLDSVILNPTWNVPWKIMVKDILPKVKADESYLETHNFQVIDGWRTMETVDTTDIDWQTINFNSFP
YRMRQQAGSRNALGLYKFNTPNKRAIYLHDTPSKGLFNDDFRAYSSGCIRVEHAEELAELLFATKVRKVPNQSNDLAPNT
KVRLKKRIPVHIIYQTVLFEEGGIQYRGDIYQYDKEGG
>Mature_518_residues
MVMGLSMLAKYFCGLLVLVSVHAWSYTSSDESRFIPADSELSFMLIYPELTQSIYQDSSLPILWDSPELVKAFEFQLSLL
EQAQMAPLFDRQLKQIRQYQSRGQWQELDILLTDTFIYYLSYIENAPLAGKEWYFSGKLHSKLPAPSPHILMRLKSSVTN
DYLLEMVLSYAPPVGDFDQFKATYSVLETASELNIERYRQKGLKRLGDPLSDKPILVERIALVGVDTSMIAVDFPVFDQD
LQTAIKSFQRMHGLTDDGIVGPDTIKWINMSFDERLTSLALNAERVRLWPRDRDSLIVVNVPSFDMKYWEDGEEVFESKV
VVGRKSRKTPLLEINLDSVILNPTWNVPWKIMVKDILPKVKADESYLETHNFQVIDGWRTMETVDTTDIDWQTINFNSFP
YRMRQQAGSRNALGLYKFNTPNKRAIYLHDTPSKGLFNDDFRAYSSGCIRVEHAEELAELLFATKVRKVPNQSNDLAPNT
KVRLKKRIPVHIIYQTVLFEEGGIQYRGDIYQYDKEGG

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=516, Percent_Identity=33.7209302325581, Blast_Score=285, Evalue=7e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 59719; Mature: 59719

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVMGLSMLAKYFCGLLVLVSVHAWSYTSSDESRFIPADSELSFMLIYPELTQSIYQDSSL
CCCCHHHHHHHHHHHHHHHHHHHCEECCCCCCEECCCCCCCEEEEEEHHHHHHHHCCCCC
PILWDSPELVKAFEFQLSLLEQAQMAPLFDRQLKQIRQYQSRGQWQELDILLTDTFIYYL
CEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHH
SYIENAPLAGKEWYFSGKLHSKLPAPSPHILMRLKSSVTNDYLLEMVLSYAPPVGDFDQF
HHHCCCCCCCCCEEECCCHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHH
KATYSVLETASELNIERYRQKGLKRLGDPLSDKPILVERIALVGVDTSMIAVDFPVFDQD
HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHEECCCCEEEEECCCCCHH
LQTAIKSFQRMHGLTDDGIVGPDTIKWINMSFDERLTSLALNAERVRLWPRDRDSLIVVN
HHHHHHHHHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHCCHHHEEECCCCCCCEEEEE
VPSFDMKYWEDGEEVFESKVVVGRKSRKTPLLEINLDSVILNPTWNVPWKIMVKDILPKV
CCCCCCHHHCCHHHHHHHHHEECCCCCCCCEEEEECCEEEECCCCCCCHHHHHHHHCCCC
KADESYLETHNFQVIDGWRTMETVDTTDIDWQTINFNSFPYRMRQQAGSRNALGLYKFNT
CCCHHHHHHCCEEEEECCCEEEECCCCCCCEEEECCCCCCHHHHHHCCCCCCEEEEEECC
PNKRAIYLHDTPSKGLFNDDFRAYSSGCIRVEHAEELAELLFATKVRKVPNQSNDLAPNT
CCCEEEEEECCCCCCCCCCHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
KVRLKKRIPVHIIYQTVLFEEGGIQYRGDIYQYDKEGG
CEEEECCCCEEEEEEEEEEECCCCEECCCEEECCCCCC
>Mature Secondary Structure
MVMGLSMLAKYFCGLLVLVSVHAWSYTSSDESRFIPADSELSFMLIYPELTQSIYQDSSL
CCCCHHHHHHHHHHHHHHHHHHHCEECCCCCCEECCCCCCCEEEEEEHHHHHHHHCCCCC
PILWDSPELVKAFEFQLSLLEQAQMAPLFDRQLKQIRQYQSRGQWQELDILLTDTFIYYL
CEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHH
SYIENAPLAGKEWYFSGKLHSKLPAPSPHILMRLKSSVTNDYLLEMVLSYAPPVGDFDQF
HHHCCCCCCCCCEEECCCHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHH
KATYSVLETASELNIERYRQKGLKRLGDPLSDKPILVERIALVGVDTSMIAVDFPVFDQD
HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHEECCCCEEEEECCCCCHH
LQTAIKSFQRMHGLTDDGIVGPDTIKWINMSFDERLTSLALNAERVRLWPRDRDSLIVVN
HHHHHHHHHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHCCHHHEEECCCCCCCEEEEE
VPSFDMKYWEDGEEVFESKVVVGRKSRKTPLLEINLDSVILNPTWNVPWKIMVKDILPKV
CCCCCCHHHCCHHHHHHHHHEECCCCCCCCEEEEECCEEEECCCCCCCHHHHHHHHCCCC
KADESYLETHNFQVIDGWRTMETVDTTDIDWQTINFNSFPYRMRQQAGSRNALGLYKFNT
CCCHHHHHHCCEEEEECCCEEEECCCCCCCEEEECCCCCCHHHHHHCCCCCCEEEEEECC
PNKRAIYLHDTPSKGLFNDDFRAYSSGCIRVEHAEELAELLFATKVRKVPNQSNDLAPNT
CCCEEEEEECCCCCCCCCCHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
KVRLKKRIPVHIIYQTVLFEEGGIQYRGDIYQYDKEGG
CEEEECCCCEEEEEEEEEEECCCCEECCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]