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The map label for this gene is ycbK [H]

Identifier: 218709905

GI number: 218709905

Start: 2061465

End: 2062085

Strand: Reverse

Name: ycbK [H]

Synonym: VS_1918

Alternate gene names: 218709905

Gene position: 2062085-2061465 (Counterclockwise)

Preceding gene: 218709906

Following gene: 218709904

Centisome position: 62.5

GC content: 42.03

Gene sequence:

>621_bases
TTGTACGTTGACGCAGCAATTTCCATTATGTATCGTGCATTTTTCGTTCGATCTAATTGGTTTTTTTGCTGTATGTCTCA
AAGTTTATTTTCACGCCGTCAGTTTCTGACTTACGCTGGTGGTACTGCTGTTGTCGCCTCAATTACTCCTTCTATCGCTT
TTGCTTCATACCCTGATCAACCAAGAACGATTAGCATGAACAATCTTCACACAGGTGAACGATTAGAGACCTGTTATTTC
GATGGTGCTAACTATGTTGGTGATGAAATGGCTCGTCTAAGCAAACTGTGCCGTGATTTCCGTCGTAATGAGATTCATCC
AATGGATAAGAACCTGTTTGATCAGATCACTCAGATTCAAAATGTACTGGGTATTCAAAAAGAAGTTCAAATCATCTCTG
GTTACCGTTCTCCAGCGACCAATGAAGCATTGCGCTCAAAGTCGAGTGGCGTAGCCAAGAAGAGCTACCACATGTTAGGT
AAAGCGATCGATTTCCGTATTGATGGCGTTAACCTAAAAGAATTAAGAGACGTTGCTAAAAGCTTGAATGCGGGTGGTGT
CGGTTATTATGCACGTAGCAACTTTATCCATATTGATACAGGTCCAGCACGCAGTTGGTAG

Upstream 100 bases:

>100_bases
TTGACCAAAAAATGACAACCAAGCTTCTATTGATAAAATTATAATGTGGATCAATAACTAACCGTGCAAAGGTTACAATT
ACTAACCTTTTGGGCGGTTT

Downstream 100 bases:

>100_bases
CGTTAAGCTGAATTTACGAGCGAATGCTAGGTACTTGTCAAAGTAGACATCCAATGTCATAGTTTGCCCAAATTTCAGTT
TGCCCTCTAAGGTTTGTATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MYVDAAISIMYRAFFVRSNWFFCCMSQSLFSRRQFLTYAGGTAVVASITPSIAFASYPDQPRTISMNNLHTGERLETCYF
DGANYVGDEMARLSKLCRDFRRNEIHPMDKNLFDQITQIQNVLGIQKEVQIISGYRSPATNEALRSKSSGVAKKSYHMLG
KAIDFRIDGVNLKELRDVAKSLNAGGVGYYARSNFIHIDTGPARSW

Sequences:

>Translated_206_residues
MYVDAAISIMYRAFFVRSNWFFCCMSQSLFSRRQFLTYAGGTAVVASITPSIAFASYPDQPRTISMNNLHTGERLETCYF
DGANYVGDEMARLSKLCRDFRRNEIHPMDKNLFDQITQIQNVLGIQKEVQIISGYRSPATNEALRSKSSGVAKKSYHMLG
KAIDFRIDGVNLKELRDVAKSLNAGGVGYYARSNFIHIDTGPARSW
>Mature_206_residues
MYVDAAISIMYRAFFVRSNWFFCCMSQSLFSRRQFLTYAGGTAVVASITPSIAFASYPDQPRTISMNNLHTGERLETCYF
DGANYVGDEMARLSKLCRDFRRNEIHPMDKNLFDQITQIQNVLGIQKEVQIISGYRSPATNEALRSKSSGVAKKSYHMLG
KAIDFRIDGVNLKELRDVAKSLNAGGVGYYARSNFIHIDTGPARSW

Specific function: Unknown

COG id: COG3108

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1666 [H]

Homologues:

Organism=Escherichia coli, GI1787157, Length=177, Percent_Identity=52.5423728813559, Blast_Score=196, Evalue=9e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010275
- InterPro:   IPR009045
- InterPro:   IPR006311 [H]

Pfam domain/function: PF05951 Peptidase_M15_2 [H]

EC number: NA

Molecular weight: Translated: 23255; Mature: 23255

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYVDAAISIMYRAFFVRSNWFFCCMSQSLFSRRQFLTYAGGTAVVASITPSIAFASYPDQ
CCHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCC
PRTISMNNLHTGERLETCYFDGANYVGDEMARLSKLCRDFRRNEIHPMDKNLFDQITQIQ
CCEEECCCCCCCCHHHHEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
NVLGIQKEVQIISGYRSPATNEALRSKSSGVAKKSYHMLGKAIDFRIDGVNLKELRDVAK
HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHEEEECCCCHHHHHHHHH
SLNAGGVGYYARSNFIHIDTGPARSW
HCCCCCEEEEECCCEEEEECCCCCCC
>Mature Secondary Structure
MYVDAAISIMYRAFFVRSNWFFCCMSQSLFSRRQFLTYAGGTAVVASITPSIAFASYPDQ
CCHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCC
PRTISMNNLHTGERLETCYFDGANYVGDEMARLSKLCRDFRRNEIHPMDKNLFDQITQIQ
CCEEECCCCCCCCHHHHEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
NVLGIQKEVQIISGYRSPATNEALRSKSSGVAKKSYHMLGKAIDFRIDGVNLKELRDVAK
HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHEEEECCCCHHHHHHHHH
SLNAGGVGYYARSNFIHIDTGPARSW
HCCCCCEEEEECCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]