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The map label for this gene is 218709900

Identifier: 218709900

GI number: 218709900

Start: 2056707

End: 2057306

Strand: Reverse

Name: 218709900

Synonym: VS_1913

Alternate gene names: NA

Gene position: 2057306-2056707 (Counterclockwise)

Preceding gene: 218709901

Following gene: 218709899

Centisome position: 62.36

GC content: 43.5

Gene sequence:

>600_bases
GTGCTGCGCGATGTCTTTTCAAATTCCATGGAGTCGGGAATGCGAAGTCTAATTTATATTGAACGCCTGTTTAATCGTAT
CGGTGATGCACTGGGATGGCTTTCCAGTATGTTGTTTATTCTACTTATCGCTAACGTTGTGTATGACGTTGTCATGAGAT
ATGCCTTCAATGATGTCTCAATCGCCTTCCAAGAGATGGAATGGCACCTTTTCTCAGCCGTTTTTCTATTAGGAGTTCCT
TATGCCATCAAGGCAGGTGGTCATGTTCGAGTAGACGTGTTCTACGAACAATTGAGCTTTAAAGCGCAAGCCATTATTGA
CCTGCTAGGCACACTGATCTTTCTGATGCCTTTCTGTTTGCTGGTTGCTTGGTTTGGTATTGATGTTGCCAAAGAGAGTT
ATAACCTCGGCGAAACCTCAGGTGACCCGGGTGGCCTGCCATATCGATGGATCATCAAAGCGATGATTCCACTGTCATTT
TTCTTGATGGCACTCAGCGGAGTCGGTTTGATCCTGCACTCGTTGAACAAAATTTTTAATCCCCATCTCATCCATGCAAA
TAACACGCATGCAAACAATATTCATACAAAGAATAAGTAG

Upstream 100 bases:

>100_bases
AACAATTAAGCAGGATAAATCCTGTAATACGCCCAAGAACCCTTTCTACGTCGTGCCTATTGCTAGTTATAAACTGAATC
GTTTTTAGTTTGGGTTAGTT

Downstream 100 bases:

>100_bases
AGGCTGAACATGATTGGAATAGTAATGTTTTTCGTAGCCTTGTTTGCACTTTTACTAGGCTTCCCGGTGGCGTTTACCTT
TGGTGGTATCGCGCTAATCT

Product: hypothetical protein

Products: NA

Alternate protein names: TRAP Transporter DctQ-Like Membrane Protein; C4-Dicarboxylate Transporter Family Protein DctQ Subunit; Mannitol Transporter; Trap Dicarboxylate Transporter Dctm Subunit; Tripartite Transporter Small Subunit; TRAP-T Family Tripartite Transporter; TRAP Transporter Small Transmembrane Protein; C4-Dicarboxylate Transporter Permease; Tripartite ATP-Independent Periplasmic Transporter; TRAP Mannitol/C4-Dicarboxylate Transporter; Permease Component Of C4 Dicarboxylate Transporter; Permease; TRAP Transporter DctQ Family Protein; Transmembrane Transporter Component; TRAP C4-Dicarboxylate Transport System DctQ Subunit; TRAP Dicarboxylate Transporter Subunit DctQ; TRAP Dicarboxylate Family Transporter DctQ Subunit; TRAP-Type Transporter Small Permease Component; Small Permease Of TRAP-Type Transporter; Trap-Type Transport System Small Permease Component; TRAP Dicarboxylate Transporter; TRAP-Type Large Permease Component; Transporter DctQ-Related Transmembrane Protein; TRAP Transporter DctQ-Like Membrane Protein Family; Triosephosphate Isomerase (TIM; TRAP-Type Transport System Small Permease Component; TRAP Transporter Small Subunit; TRAP Dicarboxylate Transporter DctQ Subunit; Tripartite ATP-Independent Periplasmic Protein; Permease Protein; C4-Dicarboxylate Transporter Small Subunit

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MLRDVFSNSMESGMRSLIYIERLFNRIGDALGWLSSMLFILLIANVVYDVVMRYAFNDVSIAFQEMEWHLFSAVFLLGVP
YAIKAGGHVRVDVFYEQLSFKAQAIIDLLGTLIFLMPFCLLVAWFGIDVAKESYNLGETSGDPGGLPYRWIIKAMIPLSF
FLMALSGVGLILHSLNKIFNPHLIHANNTHANNIHTKNK

Sequences:

>Translated_199_residues
MLRDVFSNSMESGMRSLIYIERLFNRIGDALGWLSSMLFILLIANVVYDVVMRYAFNDVSIAFQEMEWHLFSAVFLLGVP
YAIKAGGHVRVDVFYEQLSFKAQAIIDLLGTLIFLMPFCLLVAWFGIDVAKESYNLGETSGDPGGLPYRWIIKAMIPLSF
FLMALSGVGLILHSLNKIFNPHLIHANNTHANNIHTKNK
>Mature_199_residues
MLRDVFSNSMESGMRSLIYIERLFNRIGDALGWLSSMLFILLIANVVYDVVMRYAFNDVSIAFQEMEWHLFSAVFLLGVP
YAIKAGGHVRVDVFYEQLSFKAQAIIDLLGTLIFLMPFCLLVAWFGIDVAKESYNLGETSGDPGGLPYRWIIKAMIPLSF
FLMALSGVGLILHSLNKIFNPHLIHANNTHANNIHTKNK

Specific function: Unknown

COG id: COG4665

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, small permease component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22477; Mature: 22477

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRDVFSNSMESGMRSLIYIERLFNRIGDALGWLSSMLFILLIANVVYDVVMRYAFNDVS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAFQEMEWHLFSAVFLLGVPYAIKAGGHVRVDVFYEQLSFKAQAIIDLLGTLIFLMPFCL
HHHHHHHHHHHHHHHHHCCCHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVAWFGIDVAKESYNLGETSGDPGGLPYRWIIKAMIPLSFFLMALSGVGLILHSLNKIFN
HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PHLIHANNTHANNIHTKNK
CCEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MLRDVFSNSMESGMRSLIYIERLFNRIGDALGWLSSMLFILLIANVVYDVVMRYAFNDVS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAFQEMEWHLFSAVFLLGVPYAIKAGGHVRVDVFYEQLSFKAQAIIDLLGTLIFLMPFCL
HHHHHHHHHHHHHHHHHCCCHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVAWFGIDVAKESYNLGETSGDPGGLPYRWIIKAMIPLSFFLMALSGVGLILHSLNKIFN
HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PHLIHANNTHANNIHTKNK
CCEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA