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The map label for this gene is sufD [H]

Identifier: 218709891

GI number: 218709891

Start: 2044516

End: 2045787

Strand: Direct

Name: sufD [H]

Synonym: VS_1904

Alternate gene names: 218709891

Gene position: 2044516-2045787 (Clockwise)

Preceding gene: 218709890

Following gene: 218709892

Centisome position: 61.97

GC content: 43.79

Gene sequence:

>1272_bases
ATGGGTGGATCATTGATGAACAATAAACATTCATTGCTTGATTCATTTGAAACCCTTGTTCGACCGCATGAGTGGCAAAA
AAAACAATGGTCTAAATTGCTTGGGATTGAGCTACCGTCCCCTCAACATGAGGACTGGAAATACACGTCTCTTGACCGAT
TAAACGAACTAGAGCTAAGCAGCGCACCACAGCAGTCGACAGCTAACACGCCATACAATAAATTCAGTTTAGACATTGAT
GCTTATCGATTAGTCTTCGTCGACGGCTTCTTTTTAGCTCGATACTCCGACTGGATTCCAAAAGTTCGAGTGACTCCCAT
CTGTGCGCTCTCTCCAATTGAAATCGATGAGCTATCTCGTTCAATAAAGCCAGACGCTTTTACCTATATTACTGATGCTA
CCGCTTCAAGTGGCATATTAATCGAAGTCGAAGCGAATACGCAGGTATCGAAACCTATTTATCTTCTGCATATCAATTCC
GGAAAACAAGGTGATGTATCAAGCTACAGAAGCCATATTGAAGTCGCAGATCATGCGGAAGTCACCGTCATCGAACACCA
TGTTTCACAAGGTAGTGGTAGAGGCGTAACATTATCTCGCTTAACACAACACGTTGGTTGTGGTGCCCACTATCATCACA
CCAAAATTGTCGAAGAGGCCTTGAGCCAACATCACTTCGGTCACAACGATTTGGTGGTTAATGCGCATGCTAGCGCCAAC
TCTTGTTGCTTGCTCTACTCCGGCCAATTAATACGACACCAAGTAAGTTCAGAACTAACTGGCGAACAAGGTTTTGTCGC
TATGGACAGTATTTCCCTACCTCAAGGTGAGGCAGTTTTTGATACTCGCACCTATTTGAAACACAATGCAGCTCACTGCC
AAAGTGAACAAAATCATAAAACCATCGCTCGAAACCAGTCTAAGTCTGTTTTCGACGGCATGATCTATGTTGACCCTACC
GCGCAAAAAACAGACGGGCAAATGGACACCCACAGTCTGATTTTAGGCGATGAAGCCCAAGTAAACTCTAAACCTCAATT
AGAGATTTATGCCGATGATGTTAAATGCAGCCATGGTGCAACAACAGGGCAAATCGACCCAAACCAAATCAACTACTTAC
GCTCTAGAGGTATCCCAAAAGAACGAGCCGAGCACATGATTACCTCTGCGTTTGTCATTGACGTTACCGATAGAATTAAA
CACCCCGCCCTAAGACAATCTGCGATAGATAAAATCAATGCGTCACTCAATAAAGGATGTCCTAATGATTGA

Upstream 100 bases:

>100_bases
CTCAATTACATCAAACCAGATTTCGTGCACGTGTTGTACCAAGGGAAAATTGTAAAATCTGGTGACCATACGTTAGCTCA
AGAATTAGAAGAGAAAGGCT

Downstream 100 bases:

>100_bases
TTCGAGCGAAAAGACAAGCCCTTGGTTTAACGACTTCCCAGCTCTAAGAACTCAAGTTTACGACAAGCCTTTGGTCTATT
TAGACAGTGCTGCGACGGCC

Product: dufD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 422

Protein sequence:

>423_residues
MGGSLMNNKHSLLDSFETLVRPHEWQKKQWSKLLGIELPSPQHEDWKYTSLDRLNELELSSAPQQSTANTPYNKFSLDID
AYRLVFVDGFFLARYSDWIPKVRVTPICALSPIEIDELSRSIKPDAFTYITDATASSGILIEVEANTQVSKPIYLLHINS
GKQGDVSSYRSHIEVADHAEVTVIEHHVSQGSGRGVTLSRLTQHVGCGAHYHHTKIVEEALSQHHFGHNDLVVNAHASAN
SCCLLYSGQLIRHQVSSELTGEQGFVAMDSISLPQGEAVFDTRTYLKHNAAHCQSEQNHKTIARNQSKSVFDGMIYVDPT
AQKTDGQMDTHSLILGDEAQVNSKPQLEIYADDVKCSHGATTGQIDPNQINYLRSRGIPKERAEHMITSAFVIDVTDRIK
HPALRQSAIDKINASLNKGCPND

Sequences:

>Translated_423_residues
MGGSLMNNKHSLLDSFETLVRPHEWQKKQWSKLLGIELPSPQHEDWKYTSLDRLNELELSSAPQQSTANTPYNKFSLDID
AYRLVFVDGFFLARYSDWIPKVRVTPICALSPIEIDELSRSIKPDAFTYITDATASSGILIEVEANTQVSKPIYLLHINS
GKQGDVSSYRSHIEVADHAEVTVIEHHVSQGSGRGVTLSRLTQHVGCGAHYHHTKIVEEALSQHHFGHNDLVVNAHASAN
SCCLLYSGQLIRHQVSSELTGEQGFVAMDSISLPQGEAVFDTRTYLKHNAAHCQSEQNHKTIARNQSKSVFDGMIYVDPT
AQKTDGQMDTHSLILGDEAQVNSKPQLEIYADDVKCSHGATTGQIDPNQINYLRSRGIPKERAEHMITSAFVIDVTDRIK
HPALRQSAIDKINASLNKGCPND
>Mature_422_residues
GGSLMNNKHSLLDSFETLVRPHEWQKKQWSKLLGIELPSPQHEDWKYTSLDRLNELELSSAPQQSTANTPYNKFSLDIDA
YRLVFVDGFFLARYSDWIPKVRVTPICALSPIEIDELSRSIKPDAFTYITDATASSGILIEVEANTQVSKPIYLLHINSG
KQGDVSSYRSHIEVADHAEVTVIEHHVSQGSGRGVTLSRLTQHVGCGAHYHHTKIVEEALSQHHFGHNDLVVNAHASANS
CCLLYSGQLIRHQVSSELTGEQGFVAMDSISLPQGEAVFDTRTYLKHNAAHCQSEQNHKTIARNQSKSVFDGMIYVDPTA
QKTDGQMDTHSLILGDEAQVNSKPQLEIYADDVKCSHGATTGQIDPNQINYLRSRGIPKERAEHMITSAFVIDVTDRIKH
PALRQSAIDKINASLNKGCPND

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=395, Percent_Identity=40, Blast_Score=281, Evalue=8e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 47027; Mature: 46896

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGSLMNNKHSLLDSFETLVRPHEWQKKQWSKLLGIELPSPQHEDWKYTSLDRLNELELS
CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCC
SAPQQSTANTPYNKFSLDIDAYRLVFVDGFFLARYSDWIPKVRVTPICALSPIEIDELSR
CCCCCCCCCCCCCEEEECCCEEEEEEECHHHHHHHHHCCCCEEECEEEEECCCCHHHHHH
SIKPDAFTYITDATASSGILIEVEANTQVSKPIYLLHINSGKQGDVSSYRSHIEVADHAE
HCCCCCEEEEECCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHCEECCCCE
VTVIEHHVSQGSGRGVTLSRLTQHVGCGAHYHHTKIVEEALSQHHFGHNDLVVNAHASAN
EEEEEEHHCCCCCCCEEHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
SCCLLYSGQLIRHQVSSELTGEQGFVAMDSISLPQGEAVFDTRTYLKHNAAHCQSEQNHK
CEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEHHHHHHHCCHHHCCCCCCCH
TIARNQSKSVFDGMIYVDPTAQKTDGQMDTHSLILGDEAQVNSKPQLEIYADDVKCSHGA
HHHCCCCCHHHCCEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCEEECCCC
TTGQIDPNQINYLRSRGIPKERAEHMITSAFVIDVTDRIKHPALRQSAIDKINASLNKGC
CCCCCCHHHHHHHHHCCCCHHHHHHHHHHEEEEEEHHHHCCHHHHHHHHHHHHHHHCCCC
PND
CCC
>Mature Secondary Structure 
GGSLMNNKHSLLDSFETLVRPHEWQKKQWSKLLGIELPSPQHEDWKYTSLDRLNELELS
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCC
SAPQQSTANTPYNKFSLDIDAYRLVFVDGFFLARYSDWIPKVRVTPICALSPIEIDELSR
CCCCCCCCCCCCCEEEECCCEEEEEEECHHHHHHHHHCCCCEEECEEEEECCCCHHHHHH
SIKPDAFTYITDATASSGILIEVEANTQVSKPIYLLHINSGKQGDVSSYRSHIEVADHAE
HCCCCCEEEEECCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHCEECCCCE
VTVIEHHVSQGSGRGVTLSRLTQHVGCGAHYHHTKIVEEALSQHHFGHNDLVVNAHASAN
EEEEEEHHCCCCCCCEEHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
SCCLLYSGQLIRHQVSSELTGEQGFVAMDSISLPQGEAVFDTRTYLKHNAAHCQSEQNHK
CEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEHHHHHHHCCHHHCCCCCCCH
TIARNQSKSVFDGMIYVDPTAQKTDGQMDTHSLILGDEAQVNSKPQLEIYADDVKCSHGA
HHHCCCCCHHHCCEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCEEECCCC
TTGQIDPNQINYLRSRGIPKERAEHMITSAFVIDVTDRIKHPALRQSAIDKINASLNKGC
CCCCCCHHHHHHHHHCCCCHHHHHHHHHHEEEEEEHHHHCCHHHHHHHHHHHHHHHCCCC
PND
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10322040 [H]