| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218709872
Identifier: 218709872
GI number: 218709872
Start: 2029168
End: 2029833
Strand: Reverse
Name: 218709872
Synonym: VS_1885
Alternate gene names: NA
Gene position: 2029833-2029168 (Counterclockwise)
Preceding gene: 218709873
Following gene: 218709871
Centisome position: 61.52
GC content: 38.29
Gene sequence:
>666_bases TTGAGCGTGATCTTTGAGTCTCTTATTGAGATGGATAAAATTGGGTTGTTTTTAGGTGCAGCCGCAATCACTATCGTTTC CAAGTCAATAGCTGAATACTTCAGACGTAAAGAAGTATCGAGACAAATTGCAGAAGCGGAAGAACGAGCCTTTAGGACAT CAAAAAATGGCAAGCAGGTAGCCAGTCATCAGTCTAAACCTCCAAAAAAACAAGTAGACGATGTTGGTAAAGATGAAGAA ATGAAAAATCTGTTTAATCTGTATACAAAGCAGGTTGAAGGTTATCAGCATGAAACAAGAAGGAGGGCTAACTCGTCTTT TTTCTTTGCAATATTATCGATGATTGGCGGACTGATTTTTGTATTCTGGGGAGGGAGTTTTATTCTTTCCTCTGAAGGCG CAGATTATGTAGTAGCAGGAGCGTCAATATCTGCTATTGGTGGCGGTATTAGTGCTTATATTACGAAAACTTTTTTGGAC GTTCATAAGCTTTCTCTTACTCAGCTTAACCGTTACTTCAAGCAGCCAGTTATAAATGAGCATATTCTAATGGCTCAGCG GTTAACAAATGATGTTGATGACCCGTCGTTTAAACGTGAGTCATATGAAAAGCTAATCGTTAGCATTAATCAGCTAATCA TAGAAACAAACAATATCAAGCAGTAA
Upstream 100 bases:
>100_bases TTAAGGTGGTATGCGGAAGCATCGGTATTGCATTGCTCACACCTTAACAGGGCGTTAGCCGTCTTAGGTTAAATATAAAA AATTAGTTAGGAGTTTTTGA
Downstream 100 bases:
>100_bases ACGGCTAACAAAGGCATCAAGGTGACACTCGGCGGTTTTGGTATGGAGTTCAGTGCGCTTGGCTGGCTCGGTGCTGGTGC ACCTTATGCCCGGCGTTAGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 221; Mature: 220
Protein sequence:
>221_residues MSVIFESLIEMDKIGLFLGAAAITIVSKSIAEYFRRKEVSRQIAEAEERAFRTSKNGKQVASHQSKPPKKQVDDVGKDEE MKNLFNLYTKQVEGYQHETRRRANSSFFFAILSMIGGLIFVFWGGSFILSSEGADYVVAGASISAIGGGISAYITKTFLD VHKLSLTQLNRYFKQPVINEHILMAQRLTNDVDDPSFKRESYEKLIVSINQLIIETNNIKQ
Sequences:
>Translated_221_residues MSVIFESLIEMDKIGLFLGAAAITIVSKSIAEYFRRKEVSRQIAEAEERAFRTSKNGKQVASHQSKPPKKQVDDVGKDEE MKNLFNLYTKQVEGYQHETRRRANSSFFFAILSMIGGLIFVFWGGSFILSSEGADYVVAGASISAIGGGISAYITKTFLD VHKLSLTQLNRYFKQPVINEHILMAQRLTNDVDDPSFKRESYEKLIVSINQLIIETNNIKQ >Mature_220_residues SVIFESLIEMDKIGLFLGAAAITIVSKSIAEYFRRKEVSRQIAEAEERAFRTSKNGKQVASHQSKPPKKQVDDVGKDEEM KNLFNLYTKQVEGYQHETRRRANSSFFFAILSMIGGLIFVFWGGSFILSSEGADYVVAGASISAIGGGISAYITKTFLDV HKLSLTQLNRYFKQPVINEHILMAQRLTNDVDDPSFKRESYEKLIVSINQLIIETNNIKQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24912; Mature: 24781
Theoretical pI: Translated: 9.48; Mature: 9.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVIFESLIEMDKIGLFLGAAAITIVSKSIAEYFRRKEVSRQIAEAEERAFRTSKNGKQV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH ASHQSKPPKKQVDDVGKDEEMKNLFNLYTKQVEGYQHETRRRANSSFFFAILSMIGGLIF HHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH VFWGGSFILSSEGADYVVAGASISAIGGGISAYITKTFLDVHKLSLTQLNRYFKQPVINE HHHCCCEEEECCCCCEEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH HILMAQRLTNDVDDPSFKRESYEKLIVSINQLIIETNNIKQ HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SVIFESLIEMDKIGLFLGAAAITIVSKSIAEYFRRKEVSRQIAEAEERAFRTSKNGKQV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH ASHQSKPPKKQVDDVGKDEEMKNLFNLYTKQVEGYQHETRRRANSSFFFAILSMIGGLIF HHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH VFWGGSFILSSEGADYVVAGASISAIGGGISAYITKTFLDVHKLSLTQLNRYFKQPVINE HHHCCCEEEECCCCCEEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH HILMAQRLTNDVDDPSFKRESYEKLIVSINQLIIETNNIKQ HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA