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The map label for this gene is yohK [H]

Identifier: 218709704

GI number: 218709704

Start: 1842093

End: 1842770

Strand: Direct

Name: yohK [H]

Synonym: VS_1715

Alternate gene names: 218709704

Gene position: 1842093-1842770 (Clockwise)

Preceding gene: 218709703

Following gene: 218709705

Centisome position: 55.83

GC content: 45.72

Gene sequence:

>678_bases
ATGTGGATTCTACTCACCATCGTGGTATTCCTGTTTGCTCGCTGGGTAAGTCAAAAAGTAAACTCACCGCTGTGTAACCC
CCTACTGATCAGCATTGGTATCATCATTCCGATACTCACGTTCTTCAAAGTACCGTTTGAGACTTACTATGCGGACAACA
CCTGGATTACCTACATGCTGCAGCCCGCGGTAGTTGCCCTTGCTTATCCGCTTTATGAACAGCTACCTCAAATCAGAGCC
AACTGGCGCATCATCACCTTTGCTTGCACACTAGGCAGTGTAATGTCGATGACAACGACAGCATTGATCGCTGTGGCTTT
TAAAGCAGACTTAAGTTTGATTGCGAGTTTATTAGGTAAATCAGTCACCACGCCAATTGCGATGGAAGTATCGAGCCATT
TAGGTGGTGAAGCAGCGATTGCGGCAATACTGGTATTGATTGTTGGTCTGTTTGGGGCGATTTTTGCTTACCCAATCTAC
AATCTCATTGGTATTAAGAGCCCTATTGCCCGAGGTTTAACCATGGGTACCGTATCTCACGCTTTAGGCACTGCAACCTG
TGCTGAAAAGAATCAGGAAGATGCAGCATTCAGTTCTTTGGCTCTTGTGCTTTGCGGCGTCATTACCTCAATCATCGCAC
CGAGTATATTTTCGCTCGTGGTTTGGTTCTATTCTTAA

Upstream 100 bases:

>100_bases
ACGCATTGCCAATTATGGCCAGCGCCGTTGGTGGCACGTTGCTGGTGTTGGTGTCCTTATCATGGTTTTTAGACCGCTTG
CTTTCGAGAGGTAACTGATC

Downstream 100 bases:

>100_bases
CCTAAACGATCACTACGCGATTCAGCCCAACCAGAATGCTGTTTATTACAGTGTCTGTTTGGGCTTTTTATTCGCATTTA
TTTAGCAATAGCAGCCAAAT

Product: putative effector of murein hydrolase LrgB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MWILLTIVVFLFARWVSQKVNSPLCNPLLISIGIIIPILTFFKVPFETYYADNTWITYMLQPAVVALAYPLYEQLPQIRA
NWRIITFACTLGSVMSMTTTALIAVAFKADLSLIASLLGKSVTTPIAMEVSSHLGGEAAIAAILVLIVGLFGAIFAYPIY
NLIGIKSPIARGLTMGTVSHALGTATCAEKNQEDAAFSSLALVLCGVITSIIAPSIFSLVVWFYS

Sequences:

>Translated_225_residues
MWILLTIVVFLFARWVSQKVNSPLCNPLLISIGIIIPILTFFKVPFETYYADNTWITYMLQPAVVALAYPLYEQLPQIRA
NWRIITFACTLGSVMSMTTTALIAVAFKADLSLIASLLGKSVTTPIAMEVSSHLGGEAAIAAILVLIVGLFGAIFAYPIY
NLIGIKSPIARGLTMGTVSHALGTATCAEKNQEDAAFSSLALVLCGVITSIIAPSIFSLVVWFYS
>Mature_225_residues
MWILLTIVVFLFARWVSQKVNSPLCNPLLISIGIIIPILTFFKVPFETYYADNTWITYMLQPAVVALAYPLYEQLPQIRA
NWRIITFACTLGSVMSMTTTALIAVAFKADLSLIASLLGKSVTTPIAMEVSSHLGGEAAIAAILVLIVGLFGAIFAYPIY
NLIGIKSPIARGLTMGTVSHALGTATCAEKNQEDAAFSSLALVLCGVITSIIAPSIFSLVVWFYS

Specific function: Unknown

COG id: COG1346

COG function: function code M; Putative effector of murein hydrolase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yohK (E.coli)/ywbG (IPA-22R) (B.subtilis) family [H]

Homologues:

Organism=Escherichia coli, GI1788464, Length=217, Percent_Identity=49.7695852534562, Blast_Score=212, Evalue=2e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005261
- InterPro:   IPR007300 [H]

Pfam domain/function: PF04172 LrgB [H]

EC number: NA

Molecular weight: Translated: 24300; Mature: 24300

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWILLTIVVFLFARWVSQKVNSPLCNPLLISIGIIIPILTFFKVPFETYYADNTWITYML
CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEHHH
QPAVVALAYPLYEQLPQIRANWRIITFACTLGSVMSMTTTALIAVAFKADLSLIASLLGK
HHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SVTTPIAMEVSSHLGGEAAIAAILVLIVGLFGAIFAYPIYNLIGIKSPIARGLTMGTVSH
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHH
ALGTATCAEKNQEDAAFSSLALVLCGVITSIIAPSIFSLVVWFYS
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MWILLTIVVFLFARWVSQKVNSPLCNPLLISIGIIIPILTFFKVPFETYYADNTWITYML
CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEHHH
QPAVVALAYPLYEQLPQIRANWRIITFACTLGSVMSMTTTALIAVAFKADLSLIASLLGK
HHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SVTTPIAMEVSSHLGGEAAIAAILVLIVGLFGAIFAYPIYNLIGIKSPIARGLTMGTVSH
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHH
ALGTATCAEKNQEDAAFSSLALVLCGVITSIIAPSIFSLVVWFYS
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 2575702 [H]