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The map label for this gene is cydA [H]

Identifier: 218709679

GI number: 218709679

Start: 1814699

End: 1816285

Strand: Reverse

Name: cydA [H]

Synonym: VS_1690

Alternate gene names: 218709679

Gene position: 1816285-1814699 (Counterclockwise)

Preceding gene: 218709680

Following gene: 218709678

Centisome position: 55.05

GC content: 46.75

Gene sequence:

>1587_bases
ATGTTTGATGTAGTTGAATTGTCGCGTTTACAGTTTGCGCTAACCGCTATGTTCCACTTTCTCTTCGTCCCGTTAACTAT
TGGTATGTCTTGCTTACTGGCGATCATGGAATCCATCTATGTACTCACCGGTAAGCAAATCTATCAAGATATGACTCGCT
TCTGGGGCAAACTGTTTGGTATTAATTTTGCGTTGGGTGTCACGACTGGTTTAACCATGGAGTTCCAGTTCGGCACCAAC
TGGTCTTACTATTCTCACTATGTCGGGGACATCTTTGGTGCTCCCCTTGCTATCGAAGCCCTTGTCGCGTTCTTCCTAGA
ATCCACTTTTGTCGGATTGTTCTTCTTTGGTTGGGAAAGGCTATCGAAACGCCAACACCTTGTGGTGACTTGGCTGGTGG
CTCTGGGTTCGAGCTTCTCTGCACTTTGGATTTTGGTTGCCAATGGTTGGATGCAAAATCCGATAGGAGCAGAGTTCAAT
TACCAAACTATGCGTATGGAAATGACCAGCTTTGCCGAAGTGGTGCTTAACCCTGTCGCACAAGTTAAATTCCTGCATAC
CGTGGCCTCGGCGTATACCTGTGGCTCAATGTTTATCCTTGGTGTGAGCTCTTACTACTTGTTGAAAGGTCGTGACGTTG
CTTTTGCAAAACGTTCGTTTGCTGTCGCAGCTTCGTTCGGCATTGCTTCTATTATCTCGGTGATCGTATTAGGTGATGAG
TCGGGCTATGAACTGGGCGATGTTCAAAAAGTAAAGCTGGCCGCTATTGAAGCTGAATGGCACACAGAACCTGCACCTGC
GGCGTTTACCTTGTTTGGATTACCGAACCAAGAAGAAGGCAAAACCGACTTCGCGGTCAAAATCCCTTATGTGATGGGAA
TTATTGCAACGCGATCTTTGGACGAGCAAGTGACTGGGCTTCATGATCTGCGTGATCAACACCTCGTCCGCATTCGTAAC
GGAATCATCGCTTATGAACTGCTAGAGCGTTTGCGATCTGGCGATACCTCACATGAGACAGAGCAAGCTTTCGATCAAAC
CAAGCACGACCTTGGCTACGGCTTATTGCTCAAACGATACACAGACACCGTGACGGACGCGACTGAACAACAAATCCAAC
AAGCAGCCGATGATTCAATCCCAACTGTGTGGCCATTGTTCTGGTCATTCAGAATCATGGTGGGTTGTGGCTTCATTATG
TTGTTTGTCTTTGGCGCGGCTTTCTTACAAACCTACCGTAAAAACATTACGCAAAAGCCTTGGTTATTGAAGGCGGCACT
TTGGTCAATTCCGTTGCCTTGGGTGGCAATCGAAGCAGGTTGGTTTGTTGCGGAGTATGGTCGTCAGCCATGGGCGGTGG
GTGAAATCCTCCCTGTTGCGGTCGCGGCTTCTTCTCAAACTGTTGAGAACTTACTTACGTCTCTCGCGCTAATTATTAGC
CTCTATACCGTCTTCATCATTGTTGAAAGTTACTTGATGATTACCGTCGCTAAAAAAGGCCCAAGCAGTTTGAAAACGGG
GCGTTATCACTATGAACAAACAACAACATCACTTGAAGCCAAATTGGCACAACAAGTTCAACAATAA

Upstream 100 bases:

>100_bases
TTTTAACTACTTATCTGTTCTAGTTTGGTTTGTTCAAACTGTGCTGAAATACGCTCCAATTCTTAATATGAAAGCCATCA
TTATGATGTTTGGAGCTTAA

Downstream 100 bases:

>100_bases
GGTGACTGACTAATGTTTGAATATGACACATTGCGTTTAATTTGGTGGGTGCTAATCGGTGTGCTGCTGATTGGTTTTAT
GATCACCGATGGCTTCGATA

Product: cytochrome d ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit I; Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 528; Mature: 528

Protein sequence:

>528_residues
MFDVVELSRLQFALTAMFHFLFVPLTIGMSCLLAIMESIYVLTGKQIYQDMTRFWGKLFGINFALGVTTGLTMEFQFGTN
WSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWERLSKRQHLVVTWLVALGSSFSALWILVANGWMQNPIGAEFN
YQTMRMEMTSFAEVVLNPVAQVKFLHTVASAYTCGSMFILGVSSYYLLKGRDVAFAKRSFAVAASFGIASIISVIVLGDE
SGYELGDVQKVKLAAIEAEWHTEPAPAAFTLFGLPNQEEGKTDFAVKIPYVMGIIATRSLDEQVTGLHDLRDQHLVRIRN
GIIAYELLERLRSGDTSHETEQAFDQTKHDLGYGLLLKRYTDTVTDATEQQIQQAADDSIPTVWPLFWSFRIMVGCGFIM
LFVFGAAFLQTYRKNITQKPWLLKAALWSIPLPWVAIEAGWFVAEYGRQPWAVGEILPVAVAASSQTVENLLTSLALIIS
LYTVFIIVESYLMITVAKKGPSSLKTGRYHYEQTTTSLEAKLAQQVQQ

Sequences:

>Translated_528_residues
MFDVVELSRLQFALTAMFHFLFVPLTIGMSCLLAIMESIYVLTGKQIYQDMTRFWGKLFGINFALGVTTGLTMEFQFGTN
WSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWERLSKRQHLVVTWLVALGSSFSALWILVANGWMQNPIGAEFN
YQTMRMEMTSFAEVVLNPVAQVKFLHTVASAYTCGSMFILGVSSYYLLKGRDVAFAKRSFAVAASFGIASIISVIVLGDE
SGYELGDVQKVKLAAIEAEWHTEPAPAAFTLFGLPNQEEGKTDFAVKIPYVMGIIATRSLDEQVTGLHDLRDQHLVRIRN
GIIAYELLERLRSGDTSHETEQAFDQTKHDLGYGLLLKRYTDTVTDATEQQIQQAADDSIPTVWPLFWSFRIMVGCGFIM
LFVFGAAFLQTYRKNITQKPWLLKAALWSIPLPWVAIEAGWFVAEYGRQPWAVGEILPVAVAASSQTVENLLTSLALIIS
LYTVFIIVESYLMITVAKKGPSSLKTGRYHYEQTTTSLEAKLAQQVQQ
>Mature_528_residues
MFDVVELSRLQFALTAMFHFLFVPLTIGMSCLLAIMESIYVLTGKQIYQDMTRFWGKLFGINFALGVTTGLTMEFQFGTN
WSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWERLSKRQHLVVTWLVALGSSFSALWILVANGWMQNPIGAEFN
YQTMRMEMTSFAEVVLNPVAQVKFLHTVASAYTCGSMFILGVSSYYLLKGRDVAFAKRSFAVAASFGIASIISVIVLGDE
SGYELGDVQKVKLAAIEAEWHTEPAPAAFTLFGLPNQEEGKTDFAVKIPYVMGIIATRSLDEQVTGLHDLRDQHLVRIRN
GIIAYELLERLRSGDTSHETEQAFDQTKHDLGYGLLLKRYTDTVTDATEQQIQQAADDSIPTVWPLFWSFRIMVGCGFIM
LFVFGAAFLQTYRKNITQKPWLLKAALWSIPLPWVAIEAGWFVAEYGRQPWAVGEILPVAVAASSQTVENLLTSLALIIS
LYTVFIIVESYLMITVAKKGPSSLKTGRYHYEQTTTSLEAKLAQQVQQ

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=519, Percent_Identity=71.2909441233141, Blast_Score=792, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=506, Percent_Identity=59.6837944664032, Blast_Score=623, Evalue=1e-179,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 59139; Mature: 59139

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDVVELSRLQFALTAMFHFLFVPLTIGMSCLLAIMESIYVLTGKQIYQDMTRFWGKLFG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
INFALGVTTGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWER
CCEEEEECCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LSKRQHLVVTWLVALGSSFSALWILVANGWMQNPIGAEFNYQTMRMEMTSFAEVVLNPVA
HCCCHHHHHHHHHHHCCCHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
QVKFLHTVASAYTCGSMFILGVSSYYLLKGRDVAFAKRSFAVAASFGIASIISVIVLGDE
HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHEEEECCC
SGYELGDVQKVKLAAIEAEWHTEPAPAAFTLFGLPNQEEGKTDFAVKIPYVMGIIATRSL
CCCCCCCCCEEEEEEEEHHCCCCCCCCEEEEECCCCCCCCCCCEEEEHHHHHHHHHHCCH
DEQVTGLHDLRDQHLVRIRNGIIAYELLERLRSGDTSHETEQAFDQTKHDLGYGLLLKRY
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHH
TDTVTDATEQQIQQAADDSIPTVWPLFWSFRIMVGCGFIMLFVFGAAFLQTYRKNITQKP
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
WLLKAALWSIPLPWVAIEAGWFVAEYGRQPWAVGEILPVAVAASSQTVENLLTSLALIIS
HHHHHHHHHCCCCCEEEECCHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LYTVFIIVESYLMITVAKKGPSSLKTGRYHYEQTTTSLEAKLAQQVQQ
HHHHHHHHHHHHHEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFDVVELSRLQFALTAMFHFLFVPLTIGMSCLLAIMESIYVLTGKQIYQDMTRFWGKLFG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
INFALGVTTGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWER
CCEEEEECCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LSKRQHLVVTWLVALGSSFSALWILVANGWMQNPIGAEFNYQTMRMEMTSFAEVVLNPVA
HCCCHHHHHHHHHHHCCCHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
QVKFLHTVASAYTCGSMFILGVSSYYLLKGRDVAFAKRSFAVAASFGIASIISVIVLGDE
HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHEEEECCC
SGYELGDVQKVKLAAIEAEWHTEPAPAAFTLFGLPNQEEGKTDFAVKIPYVMGIIATRSL
CCCCCCCCCEEEEEEEEHHCCCCCCCCEEEEECCCCCCCCCCCEEEEHHHHHHHHHHCCH
DEQVTGLHDLRDQHLVRIRNGIIAYELLERLRSGDTSHETEQAFDQTKHDLGYGLLLKRY
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHH
TDTVTDATEQQIQQAADDSIPTVWPLFWSFRIMVGCGFIMLFVFGAAFLQTYRKNITQKP
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
WLLKAALWSIPLPWVAIEAGWFVAEYGRQPWAVGEILPVAVAASSQTVENLLTSLALIIS
HHHHHHHHHCCCCCEEEECCHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LYTVFIIVESYLMITVAKKGPSSLKTGRYHYEQTTTSLEAKLAQQVQQ
HHHHHHHHHHHHHEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]