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The map label for this gene is cydB [H]

Identifier: 218709678

GI number: 218709678

Start: 1813550

End: 1814686

Strand: Reverse

Name: cydB [H]

Synonym: VS_1689

Alternate gene names: 218709678

Gene position: 1814686-1813550 (Counterclockwise)

Preceding gene: 218709679

Following gene: 218709677

Centisome position: 55.0

GC content: 46.17

Gene sequence:

>1137_bases
ATGTTTGAATATGACACATTGCGTTTAATTTGGTGGGTGCTAATCGGTGTGCTGCTGATTGGTTTTATGATCACCGATGG
CTTCGATATGGGGGTAGGAGCGTTGTTACCGTTGATCGGTAAAACCAACTCTGAAAGACGAGTGATGATTAACTCCATTG
CACCCCATTGGGACGGGAACCAGGTGTGGTTAATTACCGCAGGTGGCGCTTTGTTTGCGGCTTGGCCGTTAGTGTATGCG
ACATCGTTTTCAAGCTTATATGTTGCGATGTACTTGGCGCTTATCTCATTGTGGCTGCGTCCTCTTGCACTTGAATACCG
AGCCAAGATAGATAACAACCAATGGCGAAAAGTGTGTGATTTAGCGATTTCGTTTTCAGGCTTCTTTCCACCTATCTTGT
TTGGTGTCGCGTTTGGAAACTTGATGCAAGGCTTACCTTTTACGCTCAATAGCTTCTTGATGGTTGAGTACCACGGATCG
TTTGTTGATTTACTTAATCCGTTTGCTCTGTTGTGTGGCTTCGTTGGTTTATTGATGGCGTTGTTGCAAGGCAGTGCTTG
GCTGATGATGAAAACGACAGATGCGCTATACAACAAGGTAAGATTGGTTGCTCAGGTGAGTGCGGAACTTATCGCTTTCC
TTATGGTGATTGGCTGTATGGCGATAAACCATATTGACGGGTATCTGATAGTCAGTGCGATGGATCATAGCTCGGCTTCG
AACCCCTTGAACAAAGAAGTCGTCACACAAGCAGGCGCTTGGTTAACCAACTTCGATACGTACCCTTGGATGTGGTTTGC
ACCGATCGGCAGCGTGACCATTCCATTGCTGGCTTTGATTGGCGCAAGGTTGAAATGGGATGCGATTGCTTTTATTAGTT
CAAGCCTGACTAACGCTTGCATCATCTTAACGGCGGGTTTCTCGATGTTCCCGTTCATTATCCCGTCGAGTGTTAATCCA
AGCCATAGCTTAACCCTTTGGGATTCAACCTCTAGCGAACTGACCTTGAACATCATGACAGGTGTCGCGTTTGTGATGGT
GCCTATCATTCTTTGTTATACCGCGTTCAGCTACCGAACCATGTTTGGACGACTCGATAACGAGTATGTCGAACGCAACG
GCAATTCACTGTATTAA

Upstream 100 bases:

>100_bases
CCCAAGCAGTTTGAAAACGGGGCGTTATCACTATGAACAAACAACAACATCACTTGAAGCCAAATTGGCACAACAAGTTC
AACAATAAGGTGACTGACTA

Downstream 100 bases:

>100_bases
GGAGTTTCTCATGTGGTATTTTGTTTGGATATTAGGCTTATTTCTAGCCTCTGCATTTGCAGTTTTGAATGTCATCAGCC
TAGAGAAAAGTGACTCAGAA

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MFEYDTLRLIWWVLIGVLLIGFMITDGFDMGVGALLPLIGKTNSERRVMINSIAPHWDGNQVWLITAGGALFAAWPLVYA
TSFSSLYVAMYLALISLWLRPLALEYRAKIDNNQWRKVCDLAISFSGFFPPILFGVAFGNLMQGLPFTLNSFLMVEYHGS
FVDLLNPFALLCGFVGLLMALLQGSAWLMMKTTDALYNKVRLVAQVSAELIAFLMVIGCMAINHIDGYLIVSAMDHSSAS
NPLNKEVVTQAGAWLTNFDTYPWMWFAPIGSVTIPLLALIGARLKWDAIAFISSSLTNACIILTAGFSMFPFIIPSSVNP
SHSLTLWDSTSSELTLNIMTGVAFVMVPIILCYTAFSYRTMFGRLDNEYVERNGNSLY

Sequences:

>Translated_378_residues
MFEYDTLRLIWWVLIGVLLIGFMITDGFDMGVGALLPLIGKTNSERRVMINSIAPHWDGNQVWLITAGGALFAAWPLVYA
TSFSSLYVAMYLALISLWLRPLALEYRAKIDNNQWRKVCDLAISFSGFFPPILFGVAFGNLMQGLPFTLNSFLMVEYHGS
FVDLLNPFALLCGFVGLLMALLQGSAWLMMKTTDALYNKVRLVAQVSAELIAFLMVIGCMAINHIDGYLIVSAMDHSSAS
NPLNKEVVTQAGAWLTNFDTYPWMWFAPIGSVTIPLLALIGARLKWDAIAFISSSLTNACIILTAGFSMFPFIIPSSVNP
SHSLTLWDSTSSELTLNIMTGVAFVMVPIILCYTAFSYRTMFGRLDNEYVERNGNSLY
>Mature_378_residues
MFEYDTLRLIWWVLIGVLLIGFMITDGFDMGVGALLPLIGKTNSERRVMINSIAPHWDGNQVWLITAGGALFAAWPLVYA
TSFSSLYVAMYLALISLWLRPLALEYRAKIDNNQWRKVCDLAISFSGFFPPILFGVAFGNLMQGLPFTLNSFLMVEYHGS
FVDLLNPFALLCGFVGLLMALLQGSAWLMMKTTDALYNKVRLVAQVSAELIAFLMVIGCMAINHIDGYLIVSAMDHSSAS
NPLNKEVVTQAGAWLTNFDTYPWMWFAPIGSVTIPLLALIGARLKWDAIAFISSSLTNACIILTAGFSMFPFIIPSSVNP
SHSLTLWDSTSSELTLNIMTGVAFVMVPIILCYTAFSYRTMFGRLDNEYVERNGNSLY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=380, Percent_Identity=56.578947368421, Blast_Score=435, Evalue=1e-123,
Organism=Escherichia coli, GI1787213, Length=379, Percent_Identity=49.0765171503958, Blast_Score=369, Evalue=1e-103,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 41974; Mature: 41974

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEYDTLRLIWWVLIGVLLIGFMITDGFDMGVGALLPLIGKTNSERRVMINSIAPHWDGN
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCC
QVWLITAGGALFAAWPLVYATSFSSLYVAMYLALISLWLRPLALEYRAKIDNNQWRKVCD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LAISFSGFFPPILFGVAFGNLMQGLPFTLNSFLMVEYHGSFVDLLNPFALLCGFVGLLMA
HHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
LLQGSAWLMMKTTDALYNKVRLVAQVSAELIAFLMVIGCMAINHIDGYLIVSAMDHSSAS
HHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
NPLNKEVVTQAGAWLTNFDTYPWMWFAPIGSVTIPLLALIGARLKWDAIAFISSSLTNAC
CCCCHHHHHHCCCCEECCCCCCEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCEE
IILTAGFSMFPFIIPSSVNPSHSLTLWDSTSSELTLNIMTGVAFVMVPIILCYTAFSYRT
EEEECCHHHHHEEECCCCCCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH
MFGRLDNEYVERNGNSLY
HHHHHCHHHHHCCCCCCC
>Mature Secondary Structure
MFEYDTLRLIWWVLIGVLLIGFMITDGFDMGVGALLPLIGKTNSERRVMINSIAPHWDGN
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCC
QVWLITAGGALFAAWPLVYATSFSSLYVAMYLALISLWLRPLALEYRAKIDNNQWRKVCD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LAISFSGFFPPILFGVAFGNLMQGLPFTLNSFLMVEYHGSFVDLLNPFALLCGFVGLLMA
HHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
LLQGSAWLMMKTTDALYNKVRLVAQVSAELIAFLMVIGCMAINHIDGYLIVSAMDHSSAS
HHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
NPLNKEVVTQAGAWLTNFDTYPWMWFAPIGSVTIPLLALIGARLKWDAIAFISSSLTNAC
CCCCHHHHHHCCCCEECCCCCCEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCEE
IILTAGFSMFPFIIPSSVNPSHSLTLWDSTSSELTLNIMTGVAFVMVPIILCYTAFSYRT
EEEECCHHHHHEEECCCCCCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH
MFGRLDNEYVERNGNSLY
HHHHHCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]