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The map label for this gene is 218709667

Identifier: 218709667

GI number: 218709667

Start: 1804644

End: 1805393

Strand: Direct

Name: 218709667

Synonym: VS_1678

Alternate gene names: NA

Gene position: 1804644-1805393 (Clockwise)

Preceding gene: 218709666

Following gene: 218709670

Centisome position: 54.7

GC content: 42.8

Gene sequence:

>750_bases
ATGCCTAACAAGTCGCTATTACCAAGATCCACTCTGTTATCTCAACTCACGCTACTCGCCTCTCTTTCTTTGGTAGGTTG
TGTTTCTGTAACCGAAGGTCCACCAAAAATGGCAAGTGATCCAATTGCGATGTCTCAATCACGTATTGAATTGGGTTTGG
GCTACATGGGACAAGGTAATATGGTCAAGGCACGTGAAAATCTAGAGCTCGCTATCAAACACGCTCCTAGCTATTACCGC
GCCCAACTTTCGATGGCACATTATTACGAGCAAGTTGGCGAAGCAGATGAAGCAAGAACCACTTATCGCAAAGCACTCAG
TCTAGATTCAAGAAACGGCAATGTATTGAATAACTACGGTACGTTCTTGTGTAAACAAGGCGAATACGAGCAAGCTGATA
AATATTTCAATCGCGCAATTGACCAACCCTACTACTACCTTGTCTCTGCAAGTTATGAGAATGCGGCATTCTGCGCGTTT
AAGGCTGGTAATACCGACCAAGCAAAATACTACTTCACACGAGCGATTGACCACGATCCAAATCGCGTAAAATCGATACT
ACAGCTATCAAAAATTGAAGTGAGTGACGCCGATTACAACGACGCTAGGCTTCGTTTATTCAAATTCCACCAACGTTATG
GCTACCAAATTCCATCGCTTAAAATCTTGGTCGATCTCGAAAACAAAGCAGGTAACAGTGCTCTAGAGAAGAAATATCAG
AGTAAATTAGATGAGTTACTTTCTGCTTAG

Upstream 100 bases:

>100_bases
CACGGCTTTTTTATGGTGTTTGGGTCGCATTCCATAATCTATCTAACACTTAAATGTGTTCGATTTCATATCATAGGTTT
GTGTTCAAAAGGAGCTGCAC

Downstream 100 bases:

>100_bases
CGCATATGAAAAACACAAAAAACGGGCTTGTTGCGTTAACAACAAGCCCGTACGTAATTTCAACTTAATGTCTTAACACA
GTGCTGCCGCTATTTTAGCG

Product: Tfp pilus assembly protein PilF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MPNKSLLPRSTLLSQLTLLASLSLVGCVSVTEGPPKMASDPIAMSQSRIELGLGYMGQGNMVKARENLELAIKHAPSYYR
AQLSMAHYYEQVGEADEARTTYRKALSLDSRNGNVLNNYGTFLCKQGEYEQADKYFNRAIDQPYYYLVSASYENAAFCAF
KAGNTDQAKYYFTRAIDHDPNRVKSILQLSKIEVSDADYNDARLRLFKFHQRYGYQIPSLKILVDLENKAGNSALEKKYQ
SKLDELLSA

Sequences:

>Translated_249_residues
MPNKSLLPRSTLLSQLTLLASLSLVGCVSVTEGPPKMASDPIAMSQSRIELGLGYMGQGNMVKARENLELAIKHAPSYYR
AQLSMAHYYEQVGEADEARTTYRKALSLDSRNGNVLNNYGTFLCKQGEYEQADKYFNRAIDQPYYYLVSASYENAAFCAF
KAGNTDQAKYYFTRAIDHDPNRVKSILQLSKIEVSDADYNDARLRLFKFHQRYGYQIPSLKILVDLENKAGNSALEKKYQ
SKLDELLSA
>Mature_248_residues
PNKSLLPRSTLLSQLTLLASLSLVGCVSVTEGPPKMASDPIAMSQSRIELGLGYMGQGNMVKARENLELAIKHAPSYYRA
QLSMAHYYEQVGEADEARTTYRKALSLDSRNGNVLNNYGTFLCKQGEYEQADKYFNRAIDQPYYYLVSASYENAAFCAFK
AGNTDQAKYYFTRAIDHDPNRVKSILQLSKIEVSDADYNDARLRLFKFHQRYGYQIPSLKILVDLENKAGNSALEKKYQS
KLDELLSA

Specific function: Unknown

COG id: COG3063

COG function: function code NU; Tfp pilus assembly protein PilF

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013360
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28092; Mature: 27961

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNKSLLPRSTLLSQLTLLASLSLVGCVSVTEGPPKMASDPIAMSQSRIELGLGYMGQGN
CCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
MVKARENLELAIKHAPSYYRAQLSMAHYYEQVGEADEARTTYRKALSLDSRNGNVLNNYG
EEEECCCCEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEECCCC
TFLCKQGEYEQADKYFNRAIDQPYYYLVSASYENAAFCAFKAGNTDQAKYYFTRAIDHDP
CEEECCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCH
NRVKSILQLSKIEVSDADYNDARLRLFKFHQRYGYQIPSLKILVDLENKAGNSALEKKYQ
HHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHH
SKLDELLSA
HHHHHHHCC
>Mature Secondary Structure 
PNKSLLPRSTLLSQLTLLASLSLVGCVSVTEGPPKMASDPIAMSQSRIELGLGYMGQGN
CCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
MVKARENLELAIKHAPSYYRAQLSMAHYYEQVGEADEARTTYRKALSLDSRNGNVLNNYG
EEEECCCCEEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEECCCC
TFLCKQGEYEQADKYFNRAIDQPYYYLVSASYENAAFCAFKAGNTDQAKYYFTRAIDHDP
CEEECCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCH
NRVKSILQLSKIEVSDADYNDARLRLFKFHQRYGYQIPSLKILVDLENKAGNSALEKKYQ
HHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHH
SKLDELLSA
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]