| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218709607
Identifier: 218709607
GI number: 218709607
Start: 1732842
End: 1733975
Strand: Reverse
Name: 218709607
Synonym: VS_1617
Alternate gene names: NA
Gene position: 1733975-1732842 (Counterclockwise)
Preceding gene: 218709612
Following gene: 218709606
Centisome position: 52.56
GC content: 46.03
Gene sequence:
>1134_bases ATGACAGCACTACTCACCATTCCCACTAGGACGTTAGGTTTCGACTACGATATTGAGATCCGAGATTGGTCTCAAAAGCT TGTCGGCTTTCATGTGTTTGAAGATGGTCGACTCCCGCTCGACGGTGGCATTGGGCTGAGCCTAAACCTTGTTGAGCAGT TTGATAAGAATGGTCGTTGGTTGGATTCATTGCCTGCTCGTTATCGTGAGATCACTGACGATTTTCCTGAGTATCAATAT CAAATGCTATGGTTGGCTGCGAACACTTATGAGGCAGCAGCACAACTGCTTGAGTTAAGACCGGTTATCTTGGCGCTAAT CTGCATGAAACACAGTGTCGATAACAAGAAAGCATTGGAACTGAGTCGCCTAGGACAAAAGAGAATCTTAGCCAAATTGG GCTTAGACAGTAGTAAAGCGACCCTTAAATTTATCGATAAGCTAGAGCTGCATTACGACATCGGTGATGAGCTTGACCAC ATTGTTCGCATTCTCGAGCCGCTGCAAAGACGTGTGCTCAAATTCAAACATTACTCTAAAGTAGGCTACACAGCGCTGCG TTTGGATCAGGTTCATCCGTTTTTAACCGGCAGTCGATTAGGTATTGCAATGGTTGAAGAGGGAAGGCTCAATGCGCCTT CAAAGATGGCCATGTTCCAAGACGCGATTTTACTGGGTCAAGATTTGGAGATGGACGATCCATTGCGTGCCATCACCAGT CAAAATTCCTTTGCTATGTTTGAGCAACTGCATGATAGATGGACAGAACAGCGTCAGTTACGCCGTCTAGAAGGAAACCG GCCTGTGGACATGGACATCCCTTATCCTGTTCCTTTACTTGGTAATGACAACATTCATCCGCTTACTGATTACTACGACC TTGAGCAAGAGGGCGTGGAACAAAAACATTGTATTGGCGTCTATCACAATCGAATCATGAGCGACCGCTATGTGGTGTTT CGAATGCTCAAGCCTCAGCGCTTAACCATTGGCCTACGTCGTGTTCCAAGCAAAGCCTTTCCGTTTGAAATTGACCAGAT TTGTGGGAAACGAAATGCACCGCCATCCGAGTCTGCTCGCCAAGTTATTCATGATTGGTTAGAAGCGAGTAAGCAAAAGT ATCCGAAGCAATAG
Upstream 100 bases:
>100_bases TGATAAGAAATTTACAAAAGGTTGTTATAGTGGTTGAAGCGCTAGCTTATTCTGTTAGATAGGCTTTACGGTTTAATGCG CCAATAACGAAGAGGCATCA
Downstream 100 bases:
>100_bases CTGCGAACTAGAAGGAATAACAGGATGTTTCAACAAGGTGATTTATGCCCGCATTGTGGTTTGATTATTGTGATACCAAC GGATTTGCAAGCCGAATGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 377; Mature: 376
Protein sequence:
>377_residues MTALLTIPTRTLGFDYDIEIRDWSQKLVGFHVFEDGRLPLDGGIGLSLNLVEQFDKNGRWLDSLPARYREITDDFPEYQY QMLWLAANTYEAAAQLLELRPVILALICMKHSVDNKKALELSRLGQKRILAKLGLDSSKATLKFIDKLELHYDIGDELDH IVRILEPLQRRVLKFKHYSKVGYTALRLDQVHPFLTGSRLGIAMVEEGRLNAPSKMAMFQDAILLGQDLEMDDPLRAITS QNSFAMFEQLHDRWTEQRQLRRLEGNRPVDMDIPYPVPLLGNDNIHPLTDYYDLEQEGVEQKHCIGVYHNRIMSDRYVVF RMLKPQRLTIGLRRVPSKAFPFEIDQICGKRNAPPSESARQVIHDWLEASKQKYPKQ
Sequences:
>Translated_377_residues MTALLTIPTRTLGFDYDIEIRDWSQKLVGFHVFEDGRLPLDGGIGLSLNLVEQFDKNGRWLDSLPARYREITDDFPEYQY QMLWLAANTYEAAAQLLELRPVILALICMKHSVDNKKALELSRLGQKRILAKLGLDSSKATLKFIDKLELHYDIGDELDH IVRILEPLQRRVLKFKHYSKVGYTALRLDQVHPFLTGSRLGIAMVEEGRLNAPSKMAMFQDAILLGQDLEMDDPLRAITS QNSFAMFEQLHDRWTEQRQLRRLEGNRPVDMDIPYPVPLLGNDNIHPLTDYYDLEQEGVEQKHCIGVYHNRIMSDRYVVF RMLKPQRLTIGLRRVPSKAFPFEIDQICGKRNAPPSESARQVIHDWLEASKQKYPKQ >Mature_376_residues TALLTIPTRTLGFDYDIEIRDWSQKLVGFHVFEDGRLPLDGGIGLSLNLVEQFDKNGRWLDSLPARYREITDDFPEYQYQ MLWLAANTYEAAAQLLELRPVILALICMKHSVDNKKALELSRLGQKRILAKLGLDSSKATLKFIDKLELHYDIGDELDHI VRILEPLQRRVLKFKHYSKVGYTALRLDQVHPFLTGSRLGIAMVEEGRLNAPSKMAMFQDAILLGQDLEMDDPLRAITSQ NSFAMFEQLHDRWTEQRQLRRLEGNRPVDMDIPYPVPLLGNDNIHPLTDYYDLEQEGVEQKHCIGVYHNRIMSDRYVVFR MLKPQRLTIGLRRVPSKAFPFEIDQICGKRNAPPSESARQVIHDWLEASKQKYPKQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43687; Mature: 43556
Theoretical pI: Translated: 7.12; Mature: 7.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTALLTIPTRTLGFDYDIEIRDWSQKLVGFHVFEDGRLPLDGGIGLSLNLVEQFDKNGRW CCEEEECCCHHHCCCEEEEEHHHHHHHHEEEEEECCCCCCCCCCCCEEHHHHHHCCCCCC LDSLPARYREITDDFPEYQYQMLWLAANTYEAAAQLLELRPVILALICMKHSVDNKKALE HHHHHHHHHHHHHCCCHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH LSRLGQKRILAKLGLDSSKATLKFIDKLELHYDIGDELDHIVRILEPLQRRVLKFKHYSK HHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH VGYTALRLDQVHPFLTGSRLGIAMVEEGRLNAPSKMAMFQDAILLGQDLEMDDPLRAITS HCHHHEEHHHCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHC QNSFAMFEQLHDRWTEQRQLRRLEGNRPVDMDIPYPVPLLGNDNIHPLTDYYDLEQEGVE CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHCCC QKHCIGVYHNRIMSDRYVVFRMLKPQRLTIGLRRVPSKAFPFEIDQICGKRNAPPSESAR HHHHHHHHHHHHHCCHHHEEECCCCCCEEHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHH QVIHDWLEASKQKYPKQ HHHHHHHHHHHHHCCCC >Mature Secondary Structure TALLTIPTRTLGFDYDIEIRDWSQKLVGFHVFEDGRLPLDGGIGLSLNLVEQFDKNGRW CEEEECCCHHHCCCEEEEEHHHHHHHHEEEEEECCCCCCCCCCCCEEHHHHHHCCCCCC LDSLPARYREITDDFPEYQYQMLWLAANTYEAAAQLLELRPVILALICMKHSVDNKKALE HHHHHHHHHHHHHCCCHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH LSRLGQKRILAKLGLDSSKATLKFIDKLELHYDIGDELDHIVRILEPLQRRVLKFKHYSK HHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH VGYTALRLDQVHPFLTGSRLGIAMVEEGRLNAPSKMAMFQDAILLGQDLEMDDPLRAITS HCHHHEEHHHCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHC QNSFAMFEQLHDRWTEQRQLRRLEGNRPVDMDIPYPVPLLGNDNIHPLTDYYDLEQEGVE CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHCCC QKHCIGVYHNRIMSDRYVVFRMLKPQRLTIGLRRVPSKAFPFEIDQICGKRNAPPSESAR HHHHHHHHHHHHHCCHHHEEECCCCCCEEHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHH QVIHDWLEASKQKYPKQ HHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA