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The map label for this gene is ybiT [H]

Identifier: 218709484

GI number: 218709484

Start: 1625127

End: 1625750

Strand: Reverse

Name: ybiT [H]

Synonym: VS_1493

Alternate gene names: 218709484

Gene position: 1625750-1625127 (Counterclockwise)

Preceding gene: 218709485

Following gene: 218709481

Centisome position: 49.28

GC content: 45.03

Gene sequence:

>624_bases
GTGGTTGAAAACCTATCTCAAGGTTTTGAAGAAGACCTATACAACAAGTTCGACGGTATTTTCGAAGTAGGTGAGCGTGT
TGCTATCATCGGTGAGAACGGTGTGGGTAAAACAACGCTACTTAACACACTAGCTGGCGCTCTTGATCCACGCACTGGTG
AGTACAAGTGGTCTGAAAACTCAAACATCGGTTACTACGCTCAAGATCACGCACACGATTTCGAGACAGACATGAACTTG
TTTGATTGGATGAGCCAATGGCGCCAAGAAGGCGAAGACGAGCAAGTTGTTCGTGGTTTCCTAGGTCGTATGCTATTTGG
TCAAGACGACATTAAGAAATCTGTAAAGGTTATCTCTGGTGGTGAACAAGGTCGTATGCTTCTTGGTAAGATCATGATGC
ACAAGCCAAACATCCTGCTTATGGATGAACCAACGAACCACATGGATATGGAATCTATCGAAGCGCTTAACTTGGCTCTT
GAGAACTACAAAGGCACATTGTTCTTCGTATCTCACGACCGTGTATTCGTAGACTCGCTTGCAACTCGTATCCTTGAAAT
CAAAGATGGCAAGATCAACGATTTCCGCGGTACTTACGCTGAGTTCTTGAAAGCACGCGGCTAA

Upstream 100 bases:

>100_bases
GCAGATCGATAAGATTCAACTAGACGAAGTTAAAGCATCTAGCCGTCAAAACCCATTCATCCGTTTTGAACAGTCTAAAG
AGCTATTCCGTAACGCACTT

Downstream 100 bases:

>100_bases
GCTTTAAGTTAGCCTTAGTTTTCAACTCAATGCGTTGGAAATTCAGGCATAAGCTATAAACCGAAAATTAAAAATTAAAA
ACGCCGTCATACTGAAAAGC

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MVENLSQGFEEDLYNKFDGIFEVGERVAIIGENGVGKTTLLNTLAGALDPRTGEYKWSENSNIGYYAQDHAHDFETDMNL
FDWMSQWRQEGEDEQVVRGFLGRMLFGQDDIKKSVKVISGGEQGRMLLGKIMMHKPNILLMDEPTNHMDMESIEALNLAL
ENYKGTLFFVSHDRVFVDSLATRILEIKDGKINDFRGTYAEFLKARG

Sequences:

>Translated_207_residues
MVENLSQGFEEDLYNKFDGIFEVGERVAIIGENGVGKTTLLNTLAGALDPRTGEYKWSENSNIGYYAQDHAHDFETDMNL
FDWMSQWRQEGEDEQVVRGFLGRMLFGQDDIKKSVKVISGGEQGRMLLGKIMMHKPNILLMDEPTNHMDMESIEALNLAL
ENYKGTLFFVSHDRVFVDSLATRILEIKDGKINDFRGTYAEFLKARG
>Mature_207_residues
MVENLSQGFEEDLYNKFDGIFEVGERVAIIGENGVGKTTLLNTLAGALDPRTGEYKWSENSNIGYYAQDHAHDFETDMNL
FDWMSQWRQEGEDEQVVRGFLGRMLFGQDDIKKSVKVISGGEQGRMLLGKIMMHKPNILLMDEPTNHMDMESIEALNLAL
ENYKGTLFFVSHDRVFVDSLATRILEIKDGKINDFRGTYAEFLKARG

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=190, Percent_Identity=30, Blast_Score=116, Evalue=1e-26,
Organism=Homo sapiens, GI10947137, Length=213, Percent_Identity=30.9859154929577, Blast_Score=104, Evalue=7e-23,
Organism=Homo sapiens, GI27881506, Length=213, Percent_Identity=30.9859154929577, Blast_Score=103, Evalue=8e-23,
Organism=Homo sapiens, GI10947135, Length=195, Percent_Identity=29.2307692307692, Blast_Score=91, Evalue=5e-19,
Organism=Homo sapiens, GI69354671, Length=195, Percent_Identity=29.2307692307692, Blast_Score=91, Evalue=6e-19,
Organism=Homo sapiens, GI255708477, Length=208, Percent_Identity=28.8461538461538, Blast_Score=65, Evalue=3e-11,
Organism=Escherichia coli, GI1787041, Length=207, Percent_Identity=63.2850241545894, Blast_Score=286, Evalue=9e-79,
Organism=Escherichia coli, GI1789751, Length=179, Percent_Identity=35.195530726257, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1787182, Length=200, Percent_Identity=34.5, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI2367384, Length=182, Percent_Identity=36.2637362637363, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1787164, Length=208, Percent_Identity=26.4423076923077, Blast_Score=71, Evalue=4e-14,
Organism=Escherichia coli, GI1788165, Length=177, Percent_Identity=26.5536723163842, Blast_Score=64, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17553372, Length=192, Percent_Identity=31.25, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17555318, Length=188, Percent_Identity=30.3191489361702, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17559834, Length=198, Percent_Identity=29.2929292929293, Blast_Score=98, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6321121, Length=203, Percent_Identity=30.5418719211823, Blast_Score=112, Evalue=3e-26,
Organism=Saccharomyces cerevisiae, GI6320874, Length=193, Percent_Identity=27.4611398963731, Blast_Score=100, Evalue=2e-22,
Organism=Saccharomyces cerevisiae, GI6324314, Length=195, Percent_Identity=28.2051282051282, Blast_Score=80, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6325030, Length=200, Percent_Identity=28.5, Blast_Score=77, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6323278, Length=197, Percent_Identity=28.4263959390863, Blast_Score=77, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24641342, Length=207, Percent_Identity=30.4347826086957, Blast_Score=106, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24666836, Length=159, Percent_Identity=33.9622641509434, Blast_Score=103, Evalue=6e-23,
Organism=Drosophila melanogaster, GI24642252, Length=202, Percent_Identity=28.7128712871287, Blast_Score=99, Evalue=1e-21,
Organism=Drosophila melanogaster, GI18859989, Length=202, Percent_Identity=28.7128712871287, Blast_Score=99, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 23586; Mature: 23586

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVENLSQGFEEDLYNKFDGIFEVGERVAIIGENGVGKTTLLNTLAGALDPRTGEYKWSEN
CCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEECCC
SNIGYYAQDHAHDFETDMNLFDWMSQWRQEGEDEQVVRGFLGRMLFGQDDIKKSVKVISG
CCCCEEECCCCCCHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCC
GEQGRMLLGKIMMHKPNILLMDEPTNHMDMESIEALNLALENYKGTLFFVSHDRVFVDSL
CCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
ATRILEIKDGKINDFRGTYAEFLKARG
HHHHHHHCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MVENLSQGFEEDLYNKFDGIFEVGERVAIIGENGVGKTTLLNTLAGALDPRTGEYKWSEN
CCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEECCC
SNIGYYAQDHAHDFETDMNLFDWMSQWRQEGEDEQVVRGFLGRMLFGQDDIKKSVKVISG
CCCCEEECCCCCCHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCC
GEQGRMLLGKIMMHKPNILLMDEPTNHMDMESIEALNLALENYKGTLFFVSHDRVFVDSL
CCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
ATRILEIKDGKINDFRGTYAEFLKARG
HHHHHHHCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]