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The map label for this gene is ybiT [H]

Identifier: 218709485

GI number: 218709485

Start: 1625828

End: 1626709

Strand: Reverse

Name: ybiT [H]

Synonym: VS_1494

Alternate gene names: 218709485

Gene position: 1626709-1625828 (Counterclockwise)

Preceding gene: 218709488

Following gene: 218709484

Centisome position: 49.3

GC content: 45.69

Gene sequence:

>882_bases
TTGATCTCCACAGCAAATATCACCCAACAATTCGGCGCTAAGCCACTTTTCGAAAATATTTCAGTTAAGTTCGGCGAAGG
CAACCGCTACGGTTTAATCGGCGCGAATGGCTGTGGTAAATCGACGTTCATGAAGATCCTATCTGGTGAACTTGAGCCAA
GTGCTGGTAACGTAAGCTACGATCCAAACGAGCGCGTAGCTAAACTAAACCAAGACCAATTTGCTTACGAAGAATTCACG
GTAATCGACACGGTTATCATGGGTCACAAAGAACTTTGGGCTATTAAGCAAGAGCGTGACCGCATTTACTCTTTGCCTGA
AATGAGCGAAGAAGACGGCATGAAGGTAGCTGATCTTGAAGTTCAGTTCGCTGAAATGGACGGTTACATGGCAGAAGCTA
AAGCCGGTGAGCTTCTTCTTGCTGTAGGTATTGAAGAATCTATGCACTTCGGTCTGATGAGCGAAGTAGCACCGGGTTGG
AAACTTCGTGTTCTATTGTCTCAAGTACTGTTTGCAGACCCGCATATCATGCTTCTTGACGAACCAACGAACAACCTGGA
CATGGACACCATCAAGTGGTTGGAAGATACGCTAAACCAACGTAACTGCACAATGATCATCATTTCGCACGACCGTCACT
TCCTAAACTCTGTTTGTACACACATGGCTGACCTTGATTACGGCGAACTTCGTCTATTCCCTGGTAACTACGATGAGTAC
ATGACAGCTGCGACACAAGCTCGTGAGCGTCTACTGTCTGAAACGCTAAGAAGAAAGCACAAATTGCTGAACTTCAAACG
TTCGTATCTCGTTTCTCTGCTAACGCATCTAAAGCGAAGCAAGCAACGTCTCGTGCTAAGCAGATCGATAAGATTCAACT
AG

Upstream 100 bases:

>100_bases
TTATCACTCACTTAATAGCGGGTAATTGCAATCAAGACTTGCAGTTAAAGCCCCGAACAAGTAACGTTGCGGCGTTTTTC
ACATTAAAAAGGTAACGGCA

Downstream 100 bases:

>100_bases
ACGAAGTTAAAGCATCTAGCCGTCAAAACCCATTCATCCGTTTTGAACAGTCTAAAGAGCTATTCCGTAACGCACTTGTG
GTTGAAAACCTATCTCAAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MISTANITQQFGAKPLFENISVKFGEGNRYGLIGANGCGKSTFMKILSGELEPSAGNVSYDPNERVAKLNQDQFAYEEFT
VIDTVIMGHKELWAIKQERDRIYSLPEMSEEDGMKVADLEVQFAEMDGYMAEAKAGELLLAVGIEESMHFGLMSEVAPGW
KLRVLLSQVLFADPHIMLLDEPTNNLDMDTIKWLEDTLNQRNCTMIIISHDRHFLNSVCTHMADLDYGELRLFPGNYDEY
MTAATQARERLLSETLRRKHKLLNFKRSYLVSLLTHLKRSKQRLVLSRSIRFN

Sequences:

>Translated_293_residues
MISTANITQQFGAKPLFENISVKFGEGNRYGLIGANGCGKSTFMKILSGELEPSAGNVSYDPNERVAKLNQDQFAYEEFT
VIDTVIMGHKELWAIKQERDRIYSLPEMSEEDGMKVADLEVQFAEMDGYMAEAKAGELLLAVGIEESMHFGLMSEVAPGW
KLRVLLSQVLFADPHIMLLDEPTNNLDMDTIKWLEDTLNQRNCTMIIISHDRHFLNSVCTHMADLDYGELRLFPGNYDEY
MTAATQARERLLSETLRRKHKLLNFKRSYLVSLLTHLKRSKQRLVLSRSIRFN
>Mature_293_residues
MISTANITQQFGAKPLFENISVKFGEGNRYGLIGANGCGKSTFMKILSGELEPSAGNVSYDPNERVAKLNQDQFAYEEFT
VIDTVIMGHKELWAIKQERDRIYSLPEMSEEDGMKVADLEVQFAEMDGYMAEAKAGELLLAVGIEESMHFGLMSEVAPGW
KLRVLLSQVLFADPHIMLLDEPTNNLDMDTIKWLEDTLNQRNCTMIIISHDRHFLNSVCTHMADLDYGELRLFPGNYDEY
MTAATQARERLLSETLRRKHKLLNFKRSYLVSLLTHLKRSKQRLVLSRSIRFN

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI10947137, Length=250, Percent_Identity=28.4, Blast_Score=122, Evalue=5e-28,
Organism=Homo sapiens, GI27881506, Length=250, Percent_Identity=28.4, Blast_Score=122, Evalue=6e-28,
Organism=Homo sapiens, GI148612853, Length=256, Percent_Identity=29.6875, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI10947135, Length=245, Percent_Identity=31.0204081632653, Blast_Score=112, Evalue=4e-25,
Organism=Homo sapiens, GI69354671, Length=245, Percent_Identity=31.0204081632653, Blast_Score=112, Evalue=4e-25,
Organism=Escherichia coli, GI1787041, Length=290, Percent_Identity=72.0689655172414, Blast_Score=452, Evalue=1e-128,
Organism=Escherichia coli, GI1787182, Length=249, Percent_Identity=34.5381526104418, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1789751, Length=240, Percent_Identity=29.1666666666667, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI2367384, Length=249, Percent_Identity=29.3172690763052, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1787029, Length=234, Percent_Identity=26.9230769230769, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI87081709, Length=253, Percent_Identity=24.901185770751, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1789672, Length=264, Percent_Identity=26.1363636363636, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788450, Length=234, Percent_Identity=23.0769230769231, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786398, Length=238, Percent_Identity=26.890756302521, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI48994943, Length=244, Percent_Identity=26.2295081967213, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790525, Length=227, Percent_Identity=25.5506607929515, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17555318, Length=276, Percent_Identity=29.3478260869565, Blast_Score=134, Evalue=5e-32,
Organism=Caenorhabditis elegans, GI17559834, Length=239, Percent_Identity=30.9623430962343, Blast_Score=124, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI17553372, Length=234, Percent_Identity=31.6239316239316, Blast_Score=120, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6320874, Length=293, Percent_Identity=29.0102389078498, Blast_Score=132, Evalue=7e-32,
Organism=Saccharomyces cerevisiae, GI6323278, Length=238, Percent_Identity=26.890756302521, Blast_Score=98, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6324314, Length=240, Percent_Identity=29.1666666666667, Blast_Score=97, Evalue=4e-21,
Organism=Saccharomyces cerevisiae, GI6325030, Length=253, Percent_Identity=26.4822134387352, Blast_Score=96, Evalue=6e-21,
Organism=Saccharomyces cerevisiae, GI6321121, Length=267, Percent_Identity=28.0898876404494, Blast_Score=96, Evalue=8e-21,
Organism=Drosophila melanogaster, GI24642252, Length=283, Percent_Identity=30.0353356890459, Blast_Score=139, Evalue=2e-33,
Organism=Drosophila melanogaster, GI18859989, Length=283, Percent_Identity=30.0353356890459, Blast_Score=139, Evalue=2e-33,
Organism=Drosophila melanogaster, GI24641342, Length=274, Percent_Identity=29.1970802919708, Blast_Score=126, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24666836, Length=291, Percent_Identity=29.2096219931272, Blast_Score=120, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 33467; Mature: 33467

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISTANITQQFGAKPLFENISVKFGEGNRYGLIGANGCGKSTFMKILSGELEPSAGNVSY
CCCCCHHHHHHCCCCCHHCCEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCC
DPNERVAKLNQDQFAYEEFTVIDTVIMGHKELWAIKQERDRIYSLPEMSEEDGMKVADLE
CCCHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
VQFAEMDGYMAEAKAGELLLAVGIEESMHFGLMSEVAPGWKLRVLLSQVLFADPHIMLLD
EEEEHHCCCHHHCCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEE
EPTNNLDMDTIKWLEDTLNQRNCTMIIISHDRHFLNSVCTHMADLDYGELRLFPGNYDEY
CCCCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCEEECCCCHHHH
MTAATQARERLLSETLRRKHKLLNFKRSYLVSLLTHLKRSKQRLVLSRSIRFN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MISTANITQQFGAKPLFENISVKFGEGNRYGLIGANGCGKSTFMKILSGELEPSAGNVSY
CCCCCHHHHHHCCCCCHHCCEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCC
DPNERVAKLNQDQFAYEEFTVIDTVIMGHKELWAIKQERDRIYSLPEMSEEDGMKVADLE
CCCHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
VQFAEMDGYMAEAKAGELLLAVGIEESMHFGLMSEVAPGWKLRVLLSQVLFADPHIMLLD
EEEEHHCCCHHHCCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEE
EPTNNLDMDTIKWLEDTLNQRNCTMIIISHDRHFLNSVCTHMADLDYGELRLFPGNYDEY
CCCCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCEEECCCCHHHH
MTAATQARERLLSETLRRKHKLLNFKRSYLVSLLTHLKRSKQRLVLSRSIRFN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]