| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
Click here to switch to the map view.
The map label for this gene is 218709259
Identifier: 218709259
GI number: 218709259
Start: 1363962
End: 1365173
Strand: Reverse
Name: 218709259
Synonym: VS_1266
Alternate gene names: NA
Gene position: 1365173-1363962 (Counterclockwise)
Preceding gene: 218709260
Following gene: 218709256
Centisome position: 41.38
GC content: 47.36
Gene sequence:
>1212_bases ATGAGACCATCTTTTCCTATCAGTATGGTGCTTGCAACGACAGTGGTTGGCTTCCAGTCTTTTGCGCAAAATATTGAGAC AACTGATTCATTAGGTATTGCAGAAAGTAGCGCTGCGCAAAAGCAATCTCTGGCGTTACAAATCAGCGAGCGTTATTCCG ATCTTGAGCTTTCATTGAAGGCTCAGATCTCAGAAAAGAACTTATCCGCGCCTGTAGATAAATTGAGCTCTACTCAGCCC TACTCTGCATTTTCAAGCCGGATGCAGAAAGCGGATCTTGGTTATCGCAAGATGAAAGGGATCAACGACTTCAGCGACTC TGTGTTAGAGGTTCGCATGGCTGATGAAGCGATGATCGAAGCTTGGAAGAATGGTGAAAACCCGCTGTTTGCATTTGAAC CATCAGGCGACGATTCGAATTGGCAATATATTGAAGCGTATGACGTGTACGGACAGGTTCATGAATTAGATGTGTACCAA ATGCCAGACGTCCCAGTGTTTGTGGTTGATAGTAACGGTGCTGAAGAGCTCAAAGCAGGCCTAATGGCGATGCAGGCAGA GATGCAAAAGCTGGGTACTACAACGCAAATCAATGCCGATAGCGATACCAATGCCGCCGAGAGTAAACCTCAAAAATCGT CTTTGATGAACAGGGCACGTCGCTCGATGGCCTTGTCAGAGCCTGAGCCGTTGAATACCACACAATTAACCAAAATCCGT TTAGCCGTCGACCAAGAACCTTGGATCTCTGGTAAAGCGGAAATCTACGCTATCGTGACGGGTGTCGATTCAAGTCGTTT AGAGCCCCAGATCGACCTCGTTGAGATGCCTTATCTGGACTACGACAAACAGACGTACTACCCGAACCAGACCGTCATCT TCTGGCCTCGCTACCGTTGGGGCGCTGCAGACATAATCTTAATGGAACACGATGATGGCACAGACTACAAAGCGCTAGCA AAACTCTTAGTTCAAGCCGCAGAAGAGATACTGAAGATGATTCCTGATCCAGAAGTTCAAGGTTATGCGATCATCCCTCA GATCACAGGCAAGATTATCGATGTGATTCCTGATGGCGTATTAGTCAATGATGACGACTTCGTGGACGTGTACTACACCT TAATGCAGAACACACCTTATGTAGACCGTCCGGGCGCAGGCGGAAATGCTGTCGCATCGTTTGCACCAGTCACCATTTCA CCAACAGAGTAA
Upstream 100 bases:
>100_bases AAATAACTGACTAACTTTTGAACACATTCACGTTACTGATAGGTTAATCCTTATAGGGCAAATGCTCTATTAATGATAAA AATTAAAATAAGGATTATTT
Downstream 100 bases:
>100_bases GTCGTTTCTTATTTAGTTAGGGCTTAATCGCTAGGCCCTAACTCTTCATTATCGAAGGTAAGTCAAACACAAAAAATCTA CTCAGAACCTAATTACAAGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 403; Mature: 403
Protein sequence:
>403_residues MRPSFPISMVLATTVVGFQSFAQNIETTDSLGIAESSAAQKQSLALQISERYSDLELSLKAQISEKNLSAPVDKLSSTQP YSAFSSRMQKADLGYRKMKGINDFSDSVLEVRMADEAMIEAWKNGENPLFAFEPSGDDSNWQYIEAYDVYGQVHELDVYQ MPDVPVFVVDSNGAEELKAGLMAMQAEMQKLGTTTQINADSDTNAAESKPQKSSLMNRARRSMALSEPEPLNTTQLTKIR LAVDQEPWISGKAEIYAIVTGVDSSRLEPQIDLVEMPYLDYDKQTYYPNQTVIFWPRYRWGAADIILMEHDDGTDYKALA KLLVQAAEEILKMIPDPEVQGYAIIPQITGKIIDVIPDGVLVNDDDFVDVYYTLMQNTPYVDRPGAGGNAVASFAPVTIS PTE
Sequences:
>Translated_403_residues MRPSFPISMVLATTVVGFQSFAQNIETTDSLGIAESSAAQKQSLALQISERYSDLELSLKAQISEKNLSAPVDKLSSTQP YSAFSSRMQKADLGYRKMKGINDFSDSVLEVRMADEAMIEAWKNGENPLFAFEPSGDDSNWQYIEAYDVYGQVHELDVYQ MPDVPVFVVDSNGAEELKAGLMAMQAEMQKLGTTTQINADSDTNAAESKPQKSSLMNRARRSMALSEPEPLNTTQLTKIR LAVDQEPWISGKAEIYAIVTGVDSSRLEPQIDLVEMPYLDYDKQTYYPNQTVIFWPRYRWGAADIILMEHDDGTDYKALA KLLVQAAEEILKMIPDPEVQGYAIIPQITGKIIDVIPDGVLVNDDDFVDVYYTLMQNTPYVDRPGAGGNAVASFAPVTIS PTE >Mature_403_residues MRPSFPISMVLATTVVGFQSFAQNIETTDSLGIAESSAAQKQSLALQISERYSDLELSLKAQISEKNLSAPVDKLSSTQP YSAFSSRMQKADLGYRKMKGINDFSDSVLEVRMADEAMIEAWKNGENPLFAFEPSGDDSNWQYIEAYDVYGQVHELDVYQ MPDVPVFVVDSNGAEELKAGLMAMQAEMQKLGTTTQINADSDTNAAESKPQKSSLMNRARRSMALSEPEPLNTTQLTKIR LAVDQEPWISGKAEIYAIVTGVDSSRLEPQIDLVEMPYLDYDKQTYYPNQTVIFWPRYRWGAADIILMEHDDGTDYKALA KLLVQAAEEILKMIPDPEVQGYAIIPQITGKIIDVIPDGVLVNDDDFVDVYYTLMQNTPYVDRPGAGGNAVASFAPVTIS PTE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44696; Mature: 44696
Theoretical pI: Translated: 4.13; Mature: 4.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPSFPISMVLATTVVGFQSFAQNIETTDSLGIAESSAAQKQSLALQISERYSDLELSLK CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHEEEECCCCCCEEEEEE AQISEKNLSAPVDKLSSTQPYSAFSSRMQKADLGYRKMKGINDFSDSVLEVRMADEAMIE EEECCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCHHHHCCCCCHHHHHEEEHHHHHHHHH AWKNGENPLFAFEPSGDDSNWQYIEAYDVYGQVHELDVYQMPDVPVFVVDSNGAEELKAG HHHCCCCCEEEECCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEECCCCHHHHHHH LMAMQAEMQKLGTTTQINADSDTNAAESKPQKSSLMNRARRSMALSEPEPLNTTQLTKIR HHHHHHHHHHCCCCEEECCCCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE LAVDQEPWISGKAEIYAIVTGVDSSRLEPQIDLVEMPYLDYDKQTYYPNQTVIFWPRYRW EEECCCCCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCEECCCCEEEEECCCCC GAADIILMEHDDGTDYKALAKLLVQAAEEILKMIPDPEVQGYAIIPQITGKIIDVIPDGV CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHCCHHEEECCCCE LVNDDDFVDVYYTLMQNTPYVDRPGAGGNAVASFAPVTISPTE EECCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEECCEEECCCC >Mature Secondary Structure MRPSFPISMVLATTVVGFQSFAQNIETTDSLGIAESSAAQKQSLALQISERYSDLELSLK CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHEEEECCCCCCEEEEEE AQISEKNLSAPVDKLSSTQPYSAFSSRMQKADLGYRKMKGINDFSDSVLEVRMADEAMIE EEECCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCHHHHCCCCCHHHHHEEEHHHHHHHHH AWKNGENPLFAFEPSGDDSNWQYIEAYDVYGQVHELDVYQMPDVPVFVVDSNGAEELKAG HHHCCCCCEEEECCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEECCCCHHHHHHH LMAMQAEMQKLGTTTQINADSDTNAAESKPQKSSLMNRARRSMALSEPEPLNTTQLTKIR HHHHHHHHHHCCCCEEECCCCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE LAVDQEPWISGKAEIYAIVTGVDSSRLEPQIDLVEMPYLDYDKQTYYPNQTVIFWPRYRW EEECCCCCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCEECCCCEEEEECCCCC GAADIILMEHDDGTDYKALAKLLVQAAEEILKMIPDPEVQGYAIIPQITGKIIDVIPDGV CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHCCHHEEECCCCE LVNDDDFVDVYYTLMQNTPYVDRPGAGGNAVASFAPVTISPTE EECCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEECCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA