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The map label for this gene is nahR [H]

Identifier: 218709256

GI number: 218709256

Start: 1361957

End: 1362841

Strand: Reverse

Name: nahR [H]

Synonym: VS_1263

Alternate gene names: 218709256

Gene position: 1362841-1361957 (Counterclockwise)

Preceding gene: 218709259

Following gene: 218709252

Centisome position: 41.31

GC content: 45.42

Gene sequence:

>885_bases
GTGGACATCAATCTAGACATTCAAAATATCCTCGTCATCAAGCGTATGTATGAACTTCGCAATGTTGGACTGGTTGCGGA
GTCGCTAGGCAAAACCTCTGGGGCGATCAGCAAGAACCTCTCGAAGTTAAAGTTGCAGCTCGACGATCCACTGTTCATTC
AAACCAAACACGGGTTTGAACCCACGACTTTTGTTGAAACCAACATCGAAAATTTTGAGCAGATCTTGAGCAGCGTTGAA
GCCATTAAACACCAAGTATTTTCGCCAGAAACTTACCAAGGTGATATCAAAATCTACGCAAATACCCTGTTCTGGGAGCG
CTTTGGCTCGAAGCTCTACTTTGCTCTGAGTAAAGAAGCCCCGCATGCTCACTACTCATTCGTTCGGTGGGGAAGCAATG
TGAGGAACAGGCTCATCGACGGTGAAGAATCCATAGCGGTTCATTACTTTGATGAAACCTTGCCACAGTCGATTTCTCAA
ATGGAATTCGGCAAAGGAAAAGTGGTGTTCTTCGTGAGAGAGGATCATCCAGCGAAAGACTTTGAGTCGCTCGCCAACTA
CCCAATCATTCTATTTAAAACCCCGGGATGGAATGACAATAAATACCCGATCCTTGATCGCCTTAGGAATATCGGTTTTC
ACGTCAACCCAAGAGTGGAAGTCGACCACCCTGCGATGATTCACGATGTTGTGTTCAAATCCGACTATTTTGGTATCACT
CTTAGTGGCAGCGTACCAGAAGGCTGTCGTAGTATTGATTTGCCCGAAAAACTGACGATCGATGTGGGTTATGTGATGAG
CTGCCGTCGTTCACAGAAAGACGCGCCTTTGAATCAATGGCTATTCCAAATGCTAAAGTCTACGCTAAAAAACAAACAAG
CGTAG

Upstream 100 bases:

>100_bases
TATCTGTTTTGTACTACCACTATGATATTAGAGTCACATAATTTCTGTACGCCTACCGCACCGAAATTACTGCCTATAAA
AGGATTCATTTGGAGAGCCT

Downstream 100 bases:

>100_bases
TTCAACATCTAAAGGCCTAAATAATTACCGGGTTAACTGCTTAAAGGCTTAACCGCTTAGCTGCTTAACGACATAACTCC
CCTACCATCCAAAAAAAGAA

Product: putative HTH-type transcriptional activator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MDINLDIQNILVIKRMYELRNVGLVAESLGKTSGAISKNLSKLKLQLDDPLFIQTKHGFEPTTFVETNIENFEQILSSVE
AIKHQVFSPETYQGDIKIYANTLFWERFGSKLYFALSKEAPHAHYSFVRWGSNVRNRLIDGEESIAVHYFDETLPQSISQ
MEFGKGKVVFFVREDHPAKDFESLANYPIILFKTPGWNDNKYPILDRLRNIGFHVNPRVEVDHPAMIHDVVFKSDYFGIT
LSGSVPEGCRSIDLPEKLTIDVGYVMSCRRSQKDAPLNQWLFQMLKSTLKNKQA

Sequences:

>Translated_294_residues
MDINLDIQNILVIKRMYELRNVGLVAESLGKTSGAISKNLSKLKLQLDDPLFIQTKHGFEPTTFVETNIENFEQILSSVE
AIKHQVFSPETYQGDIKIYANTLFWERFGSKLYFALSKEAPHAHYSFVRWGSNVRNRLIDGEESIAVHYFDETLPQSISQ
MEFGKGKVVFFVREDHPAKDFESLANYPIILFKTPGWNDNKYPILDRLRNIGFHVNPRVEVDHPAMIHDVVFKSDYFGIT
LSGSVPEGCRSIDLPEKLTIDVGYVMSCRRSQKDAPLNQWLFQMLKSTLKNKQA
>Mature_294_residues
MDINLDIQNILVIKRMYELRNVGLVAESLGKTSGAISKNLSKLKLQLDDPLFIQTKHGFEPTTFVETNIENFEQILSSVE
AIKHQVFSPETYQGDIKIYANTLFWERFGSKLYFALSKEAPHAHYSFVRWGSNVRNRLIDGEESIAVHYFDETLPQSISQ
MEFGKGKVVFFVREDHPAKDFESLANYPIILFKTPGWNDNKYPILDRLRNIGFHVNPRVEVDHPAMIHDVVFKSDYFGIT
LSGSVPEGCRSIDLPEKLTIDVGYVMSCRRSQKDAPLNQWLFQMLKSTLKNKQA

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33767; Mature: 33767

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDINLDIQNILVIKRMYELRNVGLVAESLGKTSGAISKNLSKLKLQLDDPLFIQTKHGFE
CCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHCHHHEEEEECCCEEEEECCCCC
PTTFVETNIENFEQILSSVEAIKHQVFSPETYQGDIKIYANTLFWERFGSKLYFALSKEA
CCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHCCEEEEEEECCC
PHAHYSFVRWGSNVRNRLIDGEESIAVHYFDETLPQSISQMEFGKGKVVFFVREDHPAKD
CCCHHHHHHHCHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHCCCCCEEEEEECCCCHHH
FESLANYPIILFKTPGWNDNKYPILDRLRNIGFHVNPRVEVDHPAMIHDVVFKSDYFGIT
HHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEECCCHHHHHHHHCCCCEEEE
LSGSVPEGCRSIDLPEKLTIDVGYVMSCRRSQKDAPLNQWLFQMLKSTLKNKQA
EECCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDINLDIQNILVIKRMYELRNVGLVAESLGKTSGAISKNLSKLKLQLDDPLFIQTKHGFE
CCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHCHHHEEEEECCCEEEEECCCCC
PTTFVETNIENFEQILSSVEAIKHQVFSPETYQGDIKIYANTLFWERFGSKLYFALSKEA
CCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHCCEEEEEEECCC
PHAHYSFVRWGSNVRNRLIDGEESIAVHYFDETLPQSISQMEFGKGKVVFFVREDHPAKD
CCCHHHHHHHCHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHCCCCCEEEEEECCCCHHH
FESLANYPIILFKTPGWNDNKYPILDRLRNIGFHVNPRVEVDHPAMIHDVVFKSDYFGIT
HHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEECCCHHHHHHHHCCCCEEEE
LSGSVPEGCRSIDLPEKLTIDVGYVMSCRRSQKDAPLNQWLFQMLKSTLKNKQA
EECCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]