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The map label for this gene is ynjB [H]

Identifier: 218709157

GI number: 218709157

Start: 1236693

End: 1237895

Strand: Reverse

Name: ynjB [H]

Synonym: VS_1164

Alternate gene names: 218709157

Gene position: 1237895-1236693 (Counterclockwise)

Preceding gene: 218709158

Following gene: 218709156

Centisome position: 37.52

GC content: 46.47

Gene sequence:

>1203_bases
ATGCTCTTGCCCGTTCACTACCAAATGGAAAAGTTTATGAACAAGATAGTAAGTACGTTAGGAATCATGGCAACCGTTGC
ATACAGCGCAGCCATTTACGCTGATGAAGCAACATCAACCAATAGCTGGAATCAAATAGAACAGCAGGCAGAGGGACAAA
CTGTCTACTTTCACGCTTGGGGCGGAAGCCAAGAAATCAATCGTTACCTACAATGGGCAGGCAAGGAGTTACAAAGTGAC
TACGGTGTGACCTTAAAGCATGTAAAAGTAACCGACATTGCTGAAACGACTACTCGACTACTTGCAGAAAAAGCCGCAGG
CAAGAACAGCGAAGGCAGTGTCGATATCGTTTGGATTAATGGTGAGAACTTTCGCTCGATGAAAGACAATGCGCTGTTAT
TTGGACCATTCACAGAATCACTTCCAAACTGGCAGTACGTTGATAAATCTTTACCAATTGATGTCGATTTCTCGGAGCCA
ACCGAAGGCTTAGAAGCACCTTGGGGCGTCGGACAACTGGTGTTCATTCACGACCAAGAGACGCTAAACAATCCGCCACA
ATCTTTTTCAGAGATGTTGAGCTACGCTCAAGCTTTCCCGAACCGCTTAAGCTACCCTCGCCCACCTGAATTTCATGGCA
CCAGCTTCATCAAGTCTCTACTGATTGAGCTAACAGACAACAACCCTGCACTGGCACAACCTGTTTCGGAAGACAACTTC
CAAGAAGTTACAGCACCACTGTGGGCTTACTTAGATAAATTCCATAAAGTGGCATGGCGAGGCGGAAAGCAATTTCCTGC
AGGTACATCTGAAAGCATTCAACTTCTGGATGACGGACAGCTCGACCTCGCGATTACGTTCAATCCAAACTCTGTTTATT
CAGCACAATCAAGTGGCCGCCTAGCTGAAACCACCAAGGCCTATGCTCTAGAAAGTGGCGCTCTGTCTAACATTCACTTC
CTTGCGATTCCTTGGAATGCTAATGCAAGTGCTGGCGCTCAGGTAACCATCAACTTCTTGTTGAGCCCAGAAGCACAATC
GCGCAAAGGCGACCTCAATGTTTGGGGTGATCCTTCTGTATTAAGCAGCAAGTACCTGACTGGTAGCGCTAAGAATACTC
AACAATTTAAATCGATTGATGAACCACACCCAAGCTGGCAAAACGCGCTCGAGAAAGAGTGGCTTAAGCGATACGGTAAC
TAA

Upstream 100 bases:

>100_bases
GTGACTAGGCTACTTCCCCCTCGCCGCGATTATAACGCTTTTATCTCGAACAAAATTTAACCACGAAAGGTCAACACGCC
CTAGGGAGTTTGAAAATACA

Downstream 100 bases:

>100_bases
AATTCATGCTACGCGCTCTATATTTTGTTGTTATAGCTGTGTGCATTGTCCCTACGATTCCTGGGGTAGCGGGAGTAGTG
GCCTCGTCACTGAGTTTCAT

Product: putative ABC transporter solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MLLPVHYQMEKFMNKIVSTLGIMATVAYSAAIYADEATSTNSWNQIEQQAEGQTVYFHAWGGSQEINRYLQWAGKELQSD
YGVTLKHVKVTDIAETTTRLLAEKAAGKNSEGSVDIVWINGENFRSMKDNALLFGPFTESLPNWQYVDKSLPIDVDFSEP
TEGLEAPWGVGQLVFIHDQETLNNPPQSFSEMLSYAQAFPNRLSYPRPPEFHGTSFIKSLLIELTDNNPALAQPVSEDNF
QEVTAPLWAYLDKFHKVAWRGGKQFPAGTSESIQLLDDGQLDLAITFNPNSVYSAQSSGRLAETTKAYALESGALSNIHF
LAIPWNANASAGAQVTINFLLSPEAQSRKGDLNVWGDPSVLSSKYLTGSAKNTQQFKSIDEPHPSWQNALEKEWLKRYGN

Sequences:

>Translated_400_residues
MLLPVHYQMEKFMNKIVSTLGIMATVAYSAAIYADEATSTNSWNQIEQQAEGQTVYFHAWGGSQEINRYLQWAGKELQSD
YGVTLKHVKVTDIAETTTRLLAEKAAGKNSEGSVDIVWINGENFRSMKDNALLFGPFTESLPNWQYVDKSLPIDVDFSEP
TEGLEAPWGVGQLVFIHDQETLNNPPQSFSEMLSYAQAFPNRLSYPRPPEFHGTSFIKSLLIELTDNNPALAQPVSEDNF
QEVTAPLWAYLDKFHKVAWRGGKQFPAGTSESIQLLDDGQLDLAITFNPNSVYSAQSSGRLAETTKAYALESGALSNIHF
LAIPWNANASAGAQVTINFLLSPEAQSRKGDLNVWGDPSVLSSKYLTGSAKNTQQFKSIDEPHPSWQNALEKEWLKRYGN
>Mature_400_residues
MLLPVHYQMEKFMNKIVSTLGIMATVAYSAAIYADEATSTNSWNQIEQQAEGQTVYFHAWGGSQEINRYLQWAGKELQSD
YGVTLKHVKVTDIAETTTRLLAEKAAGKNSEGSVDIVWINGENFRSMKDNALLFGPFTESLPNWQYVDKSLPIDVDFSEP
TEGLEAPWGVGQLVFIHDQETLNNPPQSFSEMLSYAQAFPNRLSYPRPPEFHGTSFIKSLLIELTDNNPALAQPVSEDNF
QEVTAPLWAYLDKFHKVAWRGGKQFPAGTSESIQLLDDGQLDLAITFNPNSVYSAQSSGRLAETTKAYALESGALSNIHF
LAIPWNANASAGAQVTINFLLSPEAQSRKGDLNVWGDPSVLSSKYLTGSAKNTQQFKSIDEPHPSWQNALEKEWLKRYGN

Specific function: Unknown

COG id: COG4134

COG function: function code R; ABC-type uncharacterized transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081966, Length=371, Percent_Identity=46.0916442048518, Blast_Score=333, Evalue=1e-92,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 44498; Mature: 44498

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLPVHYQMEKFMNKIVSTLGIMATVAYSAAIYADEATSTNSWNQIEQQAEGQTVYFHAW
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHCCCCEEEEEEC
GGSQEINRYLQWAGKELQSDYGVTLKHVKVTDIAETTTRLLAEKAAGKNSEGSVDIVWIN
CCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
GENFRSMKDNALLFGPFTESLPNWQYVDKSLPIDVDFSEPTEGLEAPWGVGQLVFIHDQE
CCCCCCCCCCEEEECCHHHCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCEEEEEECHH
TLNNPPQSFSEMLSYAQAFPNRLSYPRPPEFHGTSFIKSLLIELTDNNPALAQPVSEDNF
HHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCH
QEVTAPLWAYLDKFHKVAWRGGKQFPAGTSESIQLLDDGQLDLAITFNPNSVYSAQSSGR
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEEECCCCEECCCCCCC
LAETTKAYALESGALSNIHFLAIPWNANASAGAQVTINFLLSPEAQSRKGDLNVWGDPSV
HHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCEECCCCHH
LSSKYLTGSAKNTQQFKSIDEPHPSWQNALEKEWLKRYGN
HHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLLPVHYQMEKFMNKIVSTLGIMATVAYSAAIYADEATSTNSWNQIEQQAEGQTVYFHAW
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHCCCCEEEEEEC
GGSQEINRYLQWAGKELQSDYGVTLKHVKVTDIAETTTRLLAEKAAGKNSEGSVDIVWIN
CCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
GENFRSMKDNALLFGPFTESLPNWQYVDKSLPIDVDFSEPTEGLEAPWGVGQLVFIHDQE
CCCCCCCCCCEEEECCHHHCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCEEEEEECHH
TLNNPPQSFSEMLSYAQAFPNRLSYPRPPEFHGTSFIKSLLIELTDNNPALAQPVSEDNF
HHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCH
QEVTAPLWAYLDKFHKVAWRGGKQFPAGTSESIQLLDDGQLDLAITFNPNSVYSAQSSGR
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEEECCCCEECCCCCCC
LAETTKAYALESGALSNIHFLAIPWNANASAGAQVTINFLLSPEAQSRKGDLNVWGDPSV
HHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCEECCCCHH
LSSKYLTGSAKNTQQFKSIDEPHPSWQNALEKEWLKRYGN
HHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 10806384 [H]