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The map label for this gene is ynjC [H]

Identifier: 218709156

GI number: 218709156

Start: 1234987

End: 1236687

Strand: Reverse

Name: ynjC [H]

Synonym: VS_1163

Alternate gene names: 218709156

Gene position: 1236687-1234987 (Counterclockwise)

Preceding gene: 218709157

Following gene: 218709155

Centisome position: 37.48

GC content: 48.5

Gene sequence:

>1701_bases
ATGCTACGCGCTCTATATTTTGTTGTTATAGCTGTGTGCATTGTCCCTACGATTCCTGGGGTAGCGGGAGTAGTGGCCTC
GTCACTGAGTTTCATCCCGCCCCTAGGTTTAGAGGAACCAACACTCAACGGTTTTAACCAAGTCTTTCAATGGGAAGGGG
CTTGGCACTCTATTGGTTTGAGCCTCGGTTCAGCGGTCGCCAGCAGCTACATTGCCTGCTTCCTGACCTTTTGTATTCTT
CAGGCTTCTTGGGGAAACAAGTTTTGGAGAAAGATTGAGCTAACGCTATCGCCAATGCTTGCCATTCCGCATGTGGCTTT
CGCTATCGGCTTTGCTTTTCTGTTTAGCCCAACAGGGCTTGGCGCAAGAGCCGTGCATCACTTACTTGGTGAATCGGCTA
CAAGCTCTGAATTGGCTTTGCTGATAAAAGATCCTTACGCGTTTGGCCTAATCATTATGCTCGCACTCAAAGAAGTGCCC
TTCTTATTGCTGATGAGCATTTCGATACTTCAACAAATCGATGTTGAACGCATCACTAAGGTCAGTGCCTCTCTGGGTTA
TAGCCGTGCTCAGATCTGGTGGAAGTGTATTTTCCCACAATGGTTTACCAAGCTTCGCTTCCCTATGTTGGCGGTGCTTG
CTTACAGCGTATCGGTTGTCGACATCGCTCTGATCATTGGCCCAACCAATCCGCCGACCTTTGCCGTTTTGGTATGGCAA
TGGTTTAACGACCCAGACCTTAATCTATTGCCACGAGCTGCCGCTGGCGCCATCGTTTTATTCGGTTTGGCTTCGTTGAT
CATCGCCCTAGCGCGTCTAATCGAATGGGCAATTCTCAAGTACTTTAGAACTTGGCAATATTCAGGAAGAACAGGTATTA
ACCTTCCAGGAAAAACGATCTTCGCAGTGCTTGCTGCATTGTCACTACTGATCATTCCACTAATGGGGATTTGGAGTGTT
GCCCAACGTTGGCGTTTCCCTGATTTACTTCCAAGTCGCTACAGCATGCGTTTCTGGGAGTTTGAGTGGGATGGCATCAT
GAGCACCGTCGGGCAAAGCTTGTGGATTGGCCTTATTGCCGCTTCCGTTGCTTTATTACTCGCGCTGGTAGCTCATGAGT
ACCGAATCAAAAACAAGTGGCAAGTTCCGGGCTTTATTATCGCGATTCCCATGTTGATACCTCAACTCTCGGTATTGTTC
GGCATGCAAGTGACCACGCTTTATATCGGCAGCAGCGCCTATGAATTTTGGGTAATTTGGGCGCATGTTTTCTTTGCTTT
CCCGTTTGTGTATCTGTCTTTGGATGGCCCTTGGAAAAGCTTCGATGACGGCCTGATAAAAGCCTCGTTGAGCTTGGGTA
AATCGCCATTTAAAAGCTGGTACTCCATCAAGCTGCCTATCTTGTTACCCGCTATTGCCTTTGCTTGGGCGGTCGGGATC
AGCGTAAGTTTGGCTCAGTACTTACCCACCTTGATGCTCGGCGCGGGCCGTATTAGCACAATCACCACAGAAGCCGTTGC
CCTTACCAGTGGTTTCGACCGCAGAGTGACAGCTATCTATGCCATTTGGCAGGCCCTATTGCCTCTGTTCTTTTTCTCTT
TAGCGATATTAGTCAGCCGACTTCAACTCAGATATCGCCGTCTTACTTTTAAAGGTTTTCTAACGAATGAGTCTGCACCT
CAACGACCTCGCCATCCGTAA

Upstream 100 bases:

>100_bases
CTAAGAATACTCAACAATTTAAATCGATTGATGAACCACACCCAAGCTGGCAAAACGCGCTCGAGAAAGAGTGGCTTAAG
CGATACGGTAACTAAAATTC

Downstream 100 bases:

>100_bases
AAACGATGGTGTATCGCTGTTTTCAGCGCTAAACGTAACATTAGAATCAGGCCAAGTATTGGCTTTGATGGGGCCGAGCG
GCTGCGGAAAATCGACCTTG

Product: putative ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 566; Mature: 566

Protein sequence:

>566_residues
MLRALYFVVIAVCIVPTIPGVAGVVASSLSFIPPLGLEEPTLNGFNQVFQWEGAWHSIGLSLGSAVASSYIACFLTFCIL
QASWGNKFWRKIELTLSPMLAIPHVAFAIGFAFLFSPTGLGARAVHHLLGESATSSELALLIKDPYAFGLIIMLALKEVP
FLLLMSISILQQIDVERITKVSASLGYSRAQIWWKCIFPQWFTKLRFPMLAVLAYSVSVVDIALIIGPTNPPTFAVLVWQ
WFNDPDLNLLPRAAAGAIVLFGLASLIIALARLIEWAILKYFRTWQYSGRTGINLPGKTIFAVLAALSLLIIPLMGIWSV
AQRWRFPDLLPSRYSMRFWEFEWDGIMSTVGQSLWIGLIAASVALLLALVAHEYRIKNKWQVPGFIIAIPMLIPQLSVLF
GMQVTTLYIGSSAYEFWVIWAHVFFAFPFVYLSLDGPWKSFDDGLIKASLSLGKSPFKSWYSIKLPILLPAIAFAWAVGI
SVSLAQYLPTLMLGAGRISTITTEAVALTSGFDRRVTAIYAIWQALLPLFFFSLAILVSRLQLRYRRLTFKGFLTNESAP
QRPRHP

Sequences:

>Translated_566_residues
MLRALYFVVIAVCIVPTIPGVAGVVASSLSFIPPLGLEEPTLNGFNQVFQWEGAWHSIGLSLGSAVASSYIACFLTFCIL
QASWGNKFWRKIELTLSPMLAIPHVAFAIGFAFLFSPTGLGARAVHHLLGESATSSELALLIKDPYAFGLIIMLALKEVP
FLLLMSISILQQIDVERITKVSASLGYSRAQIWWKCIFPQWFTKLRFPMLAVLAYSVSVVDIALIIGPTNPPTFAVLVWQ
WFNDPDLNLLPRAAAGAIVLFGLASLIIALARLIEWAILKYFRTWQYSGRTGINLPGKTIFAVLAALSLLIIPLMGIWSV
AQRWRFPDLLPSRYSMRFWEFEWDGIMSTVGQSLWIGLIAASVALLLALVAHEYRIKNKWQVPGFIIAIPMLIPQLSVLF
GMQVTTLYIGSSAYEFWVIWAHVFFAFPFVYLSLDGPWKSFDDGLIKASLSLGKSPFKSWYSIKLPILLPAIAFAWAVGI
SVSLAQYLPTLMLGAGRISTITTEAVALTSGFDRRVTAIYAIWQALLPLFFFSLAILVSRLQLRYRRLTFKGFLTNESAP
QRPRHP
>Mature_566_residues
MLRALYFVVIAVCIVPTIPGVAGVVASSLSFIPPLGLEEPTLNGFNQVFQWEGAWHSIGLSLGSAVASSYIACFLTFCIL
QASWGNKFWRKIELTLSPMLAIPHVAFAIGFAFLFSPTGLGARAVHHLLGESATSSELALLIKDPYAFGLIIMLALKEVP
FLLLMSISILQQIDVERITKVSASLGYSRAQIWWKCIFPQWFTKLRFPMLAVLAYSVSVVDIALIIGPTNPPTFAVLVWQ
WFNDPDLNLLPRAAAGAIVLFGLASLIIALARLIEWAILKYFRTWQYSGRTGINLPGKTIFAVLAALSLLIIPLMGIWSV
AQRWRFPDLLPSRYSMRFWEFEWDGIMSTVGQSLWIGLIAASVALLLALVAHEYRIKNKWQVPGFIIAIPMLIPQLSVLF
GMQVTTLYIGSSAYEFWVIWAHVFFAFPFVYLSLDGPWKSFDDGLIKASLSLGKSPFKSWYSIKLPILLPAIAFAWAVGI
SVSLAQYLPTLMLGAGRISTITTEAVALTSGFDRRVTAIYAIWQALLPLFFFSLAILVSRLQLRYRRLTFKGFLTNESAP
QRPRHP

Specific function: Probably part of the binding-protein-dependent transport system ynjCD. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4135

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transmembrane type-1 domains [H]

Homologues:

Organism=Escherichia coli, GI145693149, Length=123, Percent_Identity=43.9024390243902, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 62993; Mature: 62993

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRALYFVVIAVCIVPTIPGVAGVVASSLSFIPPLGLEEPTLNGFNQVFQWEGAWHSIGL
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCHHHHHH
SLGSAVASSYIACFLTFCILQASWGNKFWRKIELTLSPMLAIPHVAFAIGFAFLFSPTGL
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GARAVHHLLGESATSSELALLIKDPYAFGLIIMLALKEVPFLLLMSISILQQIDVERITK
HHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSASLGYSRAQIWWKCIFPQWFTKLRFPMLAVLAYSVSVVDIALIIGPTNPPTFAVLVWQ
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCEEEEEEEE
WFNDPDLNLLPRAAAGAIVLFGLASLIIALARLIEWAILKYFRTWQYSGRTGINLPGKTI
ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
FAVLAALSLLIIPLMGIWSVAQRWRFPDLLPSRYSMRFWEFEWDGIMSTVGQSLWIGLIA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHH
ASVALLLALVAHEYRIKNKWQVPGFIIAIPMLIPQLSVLFGMQVTTLYIGSSAYEFWVIW
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHEEEEECCCHHHHHHHH
AHVFFAFPFVYLSLDGPWKSFDDGLIKASLSLGKSPFKSWYSIKLPILLPAIAFAWAVGI
HHHHHHHHHHEEEECCCCCCCCCHHHHHHHHCCCCHHCCHHEEEHHHHHHHHHHHHHHHH
SVSLAQYLPTLMLGAGRISTITTEAVALTSGFDRRVTAIYAIWQALLPLFFFSLAILVSR
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQLRYRRLTFKGFLTNESAPQRPRHP
HHHHHHHHHHEEEECCCCCCCCCCCC
>Mature Secondary Structure
MLRALYFVVIAVCIVPTIPGVAGVVASSLSFIPPLGLEEPTLNGFNQVFQWEGAWHSIGL
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCHHHHHH
SLGSAVASSYIACFLTFCILQASWGNKFWRKIELTLSPMLAIPHVAFAIGFAFLFSPTGL
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GARAVHHLLGESATSSELALLIKDPYAFGLIIMLALKEVPFLLLMSISILQQIDVERITK
HHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSASLGYSRAQIWWKCIFPQWFTKLRFPMLAVLAYSVSVVDIALIIGPTNPPTFAVLVWQ
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCEEEEEEEE
WFNDPDLNLLPRAAAGAIVLFGLASLIIALARLIEWAILKYFRTWQYSGRTGINLPGKTI
ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
FAVLAALSLLIIPLMGIWSVAQRWRFPDLLPSRYSMRFWEFEWDGIMSTVGQSLWIGLIA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHH
ASVALLLALVAHEYRIKNKWQVPGFIIAIPMLIPQLSVLFGMQVTTLYIGSSAYEFWVIW
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHEEEEECCCHHHHHHHH
AHVFFAFPFVYLSLDGPWKSFDDGLIKASLSLGKSPFKSWYSIKLPILLPAIAFAWAVGI
HHHHHHHHHHEEEECCCCCCCCCHHHHHHHHCCCCHHCCHHEEEHHHHHHHHHHHHHHHH
SVSLAQYLPTLMLGAGRISTITTEAVALTSGFDRRVTAIYAIWQALLPLFFFSLAILVSR
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQLRYRRLTFKGFLTNESAPQRPRHP
HHHHHHHHHHEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]