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The map label for this gene is torD

Identifier: 218709083

GI number: 218709083

Start: 1147757

End: 1148404

Strand: Reverse

Name: torD

Synonym: VS_1089

Alternate gene names: 218709083

Gene position: 1148404-1147757 (Counterclockwise)

Preceding gene: 218709084

Following gene: 218709082

Centisome position: 34.81

GC content: 40.9

Gene sequence:

>648_bases
ATGAAAGATACGAAAGCATTCAACGAACAACGAGCAGAAATATACTGGTGGCTATCAAGCTTGTTCGCTAAAGAGCTCAC
TCAAGAAGAACTCGATCACTACCACTCTGTTGAAATTCGTTCTTTCCTAACTGGTTTAGGTGAAAATGAAACACTAAAGC
CTGCGATTGATAGCTTAGTGGATGCGCTAAACCGTCTACAAACACGTGAAGATGCTCAATTAGAATTGTCTGCTGACTTC
TGTGACTTATTCTTAAAGACTGATAAACATGGCGCACTTCCTTACGCTTCTATGTATATCGGCCAGACTGGCCTATTGAA
CGATAAGCCAGCAAAAGATATGGAAGAGATCATGGCTAAACACAACTTGGTGGTTAACCAAGACCTAAAAGAGCCAGCTG
ACCACATTGCTATCGAACTCGATTTCCTAGGTAATCTAATCATTCGTTCGAACGAAACTGAACTTGAAGAAGAACTAGAG
AAATCCTTCGCTGTTCAACAGCAATTTATCGAACAGCAACTGCTTACTTGGGTACCAAAGTTCAACGTTAAATGTCATGA
CATTGACACATTCGGTTTCTACGCTTCAGTCTCATCCCTGCTATTGGCATTCTGTAAATTAGACACTCAATACCTAGCTG
GCGAATAA

Upstream 100 bases:

>100_bases
TCGCAAATAACCTTGTTATTCAGCCTTGGTGTGCCTATACATAAATCACTCGACGATGCTAGGTATACACACACCACAAG
ACTAAATCAGGATCTAAGAA

Downstream 100 bases:

>100_bases
GCTTTTTTTGACGACTCGATAAATAAATTCAATAGAATTGTGACCATTCACCCGGATTTCTGGGTGAATTTTATTGCGAG
TAATTTCTAGTCAGTCTAAA

Product: chaperone protein TorD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MKDTKAFNEQRAEIYWWLSSLFAKELTQEELDHYHSVEIRSFLTGLGENETLKPAIDSLVDALNRLQTREDAQLELSADF
CDLFLKTDKHGALPYASMYIGQTGLLNDKPAKDMEEIMAKHNLVVNQDLKEPADHIAIELDFLGNLIIRSNETELEEELE
KSFAVQQQFIEQQLLTWVPKFNVKCHDIDTFGFYASVSSLLLAFCKLDTQYLAGE

Sequences:

>Translated_215_residues
MKDTKAFNEQRAEIYWWLSSLFAKELTQEELDHYHSVEIRSFLTGLGENETLKPAIDSLVDALNRLQTREDAQLELSADF
CDLFLKTDKHGALPYASMYIGQTGLLNDKPAKDMEEIMAKHNLVVNQDLKEPADHIAIELDFLGNLIIRSNETELEEELE
KSFAVQQQFIEQQLLTWVPKFNVKCHDIDTFGFYASVSSLLLAFCKLDTQYLAGE
>Mature_215_residues
MKDTKAFNEQRAEIYWWLSSLFAKELTQEELDHYHSVEIRSFLTGLGENETLKPAIDSLVDALNRLQTREDAQLELSADF
CDLFLKTDKHGALPYASMYIGQTGLLNDKPAKDMEEIMAKHNLVVNQDLKEPADHIAIELDFLGNLIIRSNETELEEELE
KSFAVQQQFIEQQLLTWVPKFNVKCHDIDTFGFYASVSSLLLAFCKLDTQYLAGE

Specific function: Involved in the biogenesis of torA. Acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family. TorD subfamily

Homologues:

Organism=Escherichia coli, GI1787232, Length=202, Percent_Identity=34.6534653465347, Blast_Score=123, Evalue=9e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TORD_VIBSL (B7VMG5)

Other databases:

- EMBL:   FM954972
- RefSeq:   YP_002416704.1
- GeneID:   7160681
- GenomeReviews:   FM954972_GR
- KEGG:   vsp:VS_1089
- HOGENOM:   HBG662677
- OMA:   EPADHIA
- ProtClustDB:   PRK04976
- GO:   GO:0005737
- HAMAP:   MF_01150
- InterPro:   IPR023069
- InterPro:   IPR020945

Pfam domain/function: PF02613 Nitrate_red_del

EC number: NA

Molecular weight: Translated: 24654; Mature: 24654

Theoretical pI: Translated: 4.31; Mature: 4.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDTKAFNEQRAEIYWWLSSLFAKELTQEELDHYHSVEIRSFLTGLGENETLKPAIDSLV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
DALNRLQTREDAQLELSADFCDLFLKTDKHGALPYASMYIGQTGLLNDKPAKDMEEIMAK
HHHHHHHCCCCCCEEEHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHH
HNLVVNQDLKEPADHIAIELDFLGNLIIRSNETELEEELEKSFAVQQQFIEQQLLTWVPK
CCCEECCHHHCCHHHHEEEHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FNVKCHDIDTFGFYASVSSLLLAFCKLDTQYLAGE
CCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKDTKAFNEQRAEIYWWLSSLFAKELTQEELDHYHSVEIRSFLTGLGENETLKPAIDSLV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
DALNRLQTREDAQLELSADFCDLFLKTDKHGALPYASMYIGQTGLLNDKPAKDMEEIMAK
HHHHHHHCCCCCCEEEHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHH
HNLVVNQDLKEPADHIAIELDFLGNLIIRSNETELEEELEKSFAVQQQFIEQQLLTWVPK
CCCEECCHHHCCHHHHEEEHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FNVKCHDIDTFGFYASVSSLLLAFCKLDTQYLAGE
CCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA