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The map label for this gene is clpS

Identifier: 218709067

GI number: 218709067

Start: 1129869

End: 1130189

Strand: Direct

Name: clpS

Synonym: VS_1073

Alternate gene names: 218709067

Gene position: 1129869-1130189 (Clockwise)

Preceding gene: 218709065

Following gene: 218709068

Centisome position: 34.25

GC content: 41.74

Gene sequence:

>321_bases
ATGAGCAGAAACTTTGAATGGGCATCTCCAGGCTCAGATTTACTGGAGAAAGAGAGAACGAAAGTAAAGCCACCGGCAAT
GTATAACGTTGTATTACATAACGATGACTACACGCCCATGGACTTTGTAATCGAGATCCTAGAGCGATTTTTCTCACTAG
ATATCGAAAAAGCAACGGAAGTGATGCTCAAGGTTCATTATGAAGGTAAAGCTATTTGTGGCACATACAGTGCTGAAATA
GCCGAAACAAAGGTAGCGCAGGTAACGATGTACTCAAAGGAAAATGAGCATCCGCTACTATGTACAATGGAGCAAGTGTA
A

Upstream 100 bases:

>100_bases
CTTGGTGCAGTTTCTTAGTACACCGTAATGCGTGAATGTGGTAAATTTGAGTTAACTAAACATTCACGACTTCCGAAAAA
TAACCCTTAGCAAAGCTAAT

Downstream 100 bases:

>100_bases
ATTGCTCGAACAACACTGTTGTTCCCTTAGGAGGTACTTATGCTAAATAAAGAATTAGAGACGAGTTTAAATGGCGCATT
TTCTCGTGCGCGAGACAAGC

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 105

Protein sequence:

>106_residues
MSRNFEWASPGSDLLEKERTKVKPPAMYNVVLHNDDYTPMDFVIEILERFFSLDIEKATEVMLKVHYEGKAICGTYSAEI
AETKVAQVTMYSKENEHPLLCTMEQV

Sequences:

>Translated_106_residues
MSRNFEWASPGSDLLEKERTKVKPPAMYNVVLHNDDYTPMDFVIEILERFFSLDIEKATEVMLKVHYEGKAICGTYSAEI
AETKVAQVTMYSKENEHPLLCTMEQV
>Mature_105_residues
SRNFEWASPGSDLLEKERTKVKPPAMYNVVLHNDDYTPMDFVIEILERFFSLDIEKATEVMLKVHYEGKAICGTYSAEIA
ETKVAQVTMYSKENEHPLLCTMEQV

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

Organism=Escherichia coli, GI1787108, Length=105, Percent_Identity=58.0952380952381, Blast_Score=141, Evalue=1e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS_VIBSL (B7VM32)

Other databases:

- EMBL:   FM954972
- RefSeq:   YP_002416688.1
- ProteinModelPortal:   B7VM32
- SMR:   B7VM32
- GeneID:   7160665
- GenomeReviews:   FM954972_GR
- KEGG:   vsp:VS_1073
- HOGENOM:   HBG644923
- OMA:   FVIHILE
- ProtClustDB:   PRK00033
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 12222; Mature: 12091

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRNFEWASPGSDLLEKERTKVKPPAMYNVVLHNDDYTPMDFVIEILERFFSLDIEKATE
CCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHE
VMLKVHYEGKAICGTYSAEIAETKVAQVTMYSKENEHPLLCTMEQV
EEEEEECCCCEEECCCCCHHHHHHHEEEEEECCCCCCCEEEEECCC
>Mature Secondary Structure 
SRNFEWASPGSDLLEKERTKVKPPAMYNVVLHNDDYTPMDFVIEILERFFSLDIEKATE
CCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHE
VMLKVHYEGKAICGTYSAEIAETKVAQVTMYSKENEHPLLCTMEQV
EEEEEECCCCEEECCCCCHHHHHHHEEEEEECCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA