Click here to switch to the map view.

The map label for this gene is ycfD [H]

Identifier: 218709057

GI number: 218709057

Start: 1118842

End: 1119975

Strand: Reverse

Name: ycfD [H]

Synonym: VS_1063

Alternate gene names: 218709057

Gene position: 1119975-1118842 (Counterclockwise)

Preceding gene: 218709058

Following gene: 218709055

Centisome position: 33.95

GC content: 44.8

Gene sequence:

>1134_bases
ATGTACCAACTTAGCTTTTCTATGCCCGAGTTTCTTGAAAACTACTGGCATAAAAAACCAACCATCTTGAAAGGTGGCTT
CCAAAACTTCGTCGACCCAATTTCGCCGGAAGAACTTGCTGGTTTATCGATGGAAGAAGAAGTGGATTCTCGCTTTGTCT
CTAACCTCGACAATCAATGGACTGCAGAACATGGTCCATTCTCAGAAGAGAAGTTTGGCGAACTCACTGAAACACATTGG
CAATTGATCGTTCAAGCGGCTAACCACTGGCATCAGGGTGCCAATCAGCTGACTGAAGCGTTCCAAGCGTTACCAAACTG
GTTATTCGACGATCTAATGATCTGCTATTCAGCACCAGAAGGTGGCGTAGGCCCCCATATTGATCAATACGATGTATTCA
TCATTCAAGGCCAAGGTAAACGCCAGTGGAAAGTCGGCGCAAAAGATATTGGCCAATACAAAGAGACCGTTCAAGCTTCT
GCACTTCGTCAAATCGAAGGTTTTGACCCGATCATTGATGAAACTTTAGAGCCGGGCGATATCCTTTATATCCCACCAGG
TTTCCCGCATGAAGGGAACACGTTAGAGCCGTCAATGAGCTACTCTATTGGCTACCGCTCCCCTAAAGAACAAGAGCTGA
TTAGCAACTTTGCCGACTTTGTACTTGCTCATGATATGGGTGATGTTCACCTGCATGATCCAGAGTTCAAAACGCAAGAA
GGCTACGGCAAAATTCGTTCATCGGATTTAAGCAATCTCACTGACATGTTGAAATCTGCACTAGAGCAACCTGAAACCAT
CAGCGAATTCATGGGATGTTTGCTAAGCCAATCACGCCACCAGCTTGATATCGTCGCTCCTGAGCCATTTTGGACAGAAG
AAGAGATCGCTCAGCACTTAGAGTCAGAAGGCGAGATTTGTCGAGTATCGGGCTTAAAAGCGCTCTACCATGAGAATGAA
AGCAACACAGCTTACATCAATGGGGAAGTCGTTAAAGTTGAACAGGCTGATTCTTCGCTACTAAACGTACTGTGTGATGA
TTCAGTAATTAACTCAACAACTAATCTTTCTCCTTCAGGTGTAACCGTCGTGACGGAATTGGTGAATAAAGGTTACTGGT
TTATCGAAGACTAA

Upstream 100 bases:

>100_bases
CAAGATTTACAAGCCAAACTAGCATCTAGCATCTAGCATCTAGCATCTAGCATCTAGCATCTAGCATCTAGCATCTAGCA
TAAAAACATACAGGATTCAC

Downstream 100 bases:

>100_bases
CTTCGTTAATCGGTTTCGCGGATATCGCCAAGCCCTAGAGCGTTAGAGCCCAAGAAAAATAAAAGGGGCAAATGAAATCT
TCATTTGTCCCTTTTTCTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MYQLSFSMPEFLENYWHKKPTILKGGFQNFVDPISPEELAGLSMEEEVDSRFVSNLDNQWTAEHGPFSEEKFGELTETHW
QLIVQAANHWHQGANQLTEAFQALPNWLFDDLMICYSAPEGGVGPHIDQYDVFIIQGQGKRQWKVGAKDIGQYKETVQAS
ALRQIEGFDPIIDETLEPGDILYIPPGFPHEGNTLEPSMSYSIGYRSPKEQELISNFADFVLAHDMGDVHLHDPEFKTQE
GYGKIRSSDLSNLTDMLKSALEQPETISEFMGCLLSQSRHQLDIVAPEPFWTEEEIAQHLESEGEICRVSGLKALYHENE
SNTAYINGEVVKVEQADSSLLNVLCDDSVINSTTNLSPSGVTVVTELVNKGYWFIED

Sequences:

>Translated_377_residues
MYQLSFSMPEFLENYWHKKPTILKGGFQNFVDPISPEELAGLSMEEEVDSRFVSNLDNQWTAEHGPFSEEKFGELTETHW
QLIVQAANHWHQGANQLTEAFQALPNWLFDDLMICYSAPEGGVGPHIDQYDVFIIQGQGKRQWKVGAKDIGQYKETVQAS
ALRQIEGFDPIIDETLEPGDILYIPPGFPHEGNTLEPSMSYSIGYRSPKEQELISNFADFVLAHDMGDVHLHDPEFKTQE
GYGKIRSSDLSNLTDMLKSALEQPETISEFMGCLLSQSRHQLDIVAPEPFWTEEEIAQHLESEGEICRVSGLKALYHENE
SNTAYINGEVVKVEQADSSLLNVLCDDSVINSTTNLSPSGVTVVTELVNKGYWFIED
>Mature_377_residues
MYQLSFSMPEFLENYWHKKPTILKGGFQNFVDPISPEELAGLSMEEEVDSRFVSNLDNQWTAEHGPFSEEKFGELTETHW
QLIVQAANHWHQGANQLTEAFQALPNWLFDDLMICYSAPEGGVGPHIDQYDVFIIQGQGKRQWKVGAKDIGQYKETVQAS
ALRQIEGFDPIIDETLEPGDILYIPPGFPHEGNTLEPSMSYSIGYRSPKEQELISNFADFVLAHDMGDVHLHDPEFKTQE
GYGKIRSSDLSNLTDMLKSALEQPETISEFMGCLLSQSRHQLDIVAPEPFWTEEEIAQHLESEGEICRVSGLKALYHENE
SNTAYINGEVVKVEQADSSLLNVLCDDSVINSTTNLSPSGVTVVTELVNKGYWFIED

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=379, Percent_Identity=46.1741424802111, Blast_Score=352, Evalue=3e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 42528; Mature: 42528

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYQLSFSMPEFLENYWHKKPTILKGGFQNFVDPISPEELAGLSMEEEVDSRFVSNLDNQW
CEEECCCCHHHHHHHHCCCCCEECCCHHHHCCCCCHHHHHCCCHHHHHHHHHHHCCCCCC
TAEHGPFSEEKFGELTETHWQLIVQAANHWHQGANQLTEAFQALPNWLFDDLMICYSAPE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GGVGPHIDQYDVFIIQGQGKRQWKVGAKDIGQYKETVQASALRQIEGFDPIIDETLEPGD
CCCCCCCCCEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCC
ILYIPPGFPHEGNTLEPSMSYSIGYRSPKEQELISNFADFVLAHDMGDVHLHDPEFKTQE
EEEECCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCC
GYGKIRSSDLSNLTDMLKSALEQPETISEFMGCLLSQSRHQLDIVAPEPFWTEEEIAQHL
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHH
ESEGEICRVSGLKALYHENESNTAYINGEVVKVEQADSSLLNVLCDDSVINSTTNLSPSG
HCCCCEEEHHCHHHHHHCCCCCEEEECCEEEEEECHHHHHHHHHHCCHHHCCCCCCCCCC
VTVVTELVNKGYWFIED
HHHHHHHHHCCCEEEEC
>Mature Secondary Structure
MYQLSFSMPEFLENYWHKKPTILKGGFQNFVDPISPEELAGLSMEEEVDSRFVSNLDNQW
CEEECCCCHHHHHHHHCCCCCEECCCHHHHCCCCCHHHHHCCCHHHHHHHHHHHCCCCCC
TAEHGPFSEEKFGELTETHWQLIVQAANHWHQGANQLTEAFQALPNWLFDDLMICYSAPE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GGVGPHIDQYDVFIIQGQGKRQWKVGAKDIGQYKETVQASALRQIEGFDPIIDETLEPGD
CCCCCCCCCEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCC
ILYIPPGFPHEGNTLEPSMSYSIGYRSPKEQELISNFADFVLAHDMGDVHLHDPEFKTQE
EEEECCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCC
GYGKIRSSDLSNLTDMLKSALEQPETISEFMGCLLSQSRHQLDIVAPEPFWTEEEIAQHL
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHH
ESEGEICRVSGLKALYHENESNTAYINGEVVKVEQADSSLLNVLCDDSVINSTTNLSPSG
HCCCCEEEHHCHHHHHHCCCCCEEEECCEEEEEECHHHHHHHHHHCCHHHCCCCCCCCCC
VTVVTELVNKGYWFIED
HHHHHHHHHCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]