| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218709047
Identifier: 218709047
GI number: 218709047
Start: 1102929
End: 1104470
Strand: Reverse
Name: 218709047
Synonym: VS_1053
Alternate gene names: NA
Gene position: 1104470-1102929 (Counterclockwise)
Preceding gene: 218709053
Following gene: 218709046
Centisome position: 33.48
GC content: 45.27
Gene sequence:
>1542_bases ATGTCAGACGTTGTGAATAATGCGAACTCTGAAGTAGAAGAGAAAAGCTATAAAGAGCTACACCGCCCTGCTTCTGAATT TGAGAGCCGCTCAGATTACTTAGATCACGAACTTCAAATCATGAAGCCTCGTCGTTTTGGCCTAAACCTTCCAGGCCGTG ATTTCCGTTTTGAACTTGAAGATCTTGTTCCTGCACTTGCTGGTACCATCGGTATCATCGCGATGTACTCTGCAGTAATG ATGTCTTGGGCTGATGGCCTAACTCAAGCTTGGGATCACGTAAACCTAGGTAAAGACTTCGCGATTGAAGTTGCTCGTGT AGAAATGCTGATTCCTGCACTGCTGTTCTGTATCCTTGCTTCTGGTTTCTTCAACCCTAAAGCAAACCTTGCCGGTAACC ACGGCCCAATGATTCCTCTTATTGGTACCATCGCTCTCGCTGGTGCTCACCCTCTTGCATTGGCTATCCTTATCGGTGTC TTCGGTCTAATCCTAAGTTTCCTAAAAGGCGGCTCCAAGCTGGTTAACCTGACTTCGGAAGGTACCGCTGGTGGCTTGCT CATTTTCTTAGGCCTAACGGGTACCATGAGCCAAATTAACTCGATTCAAGCATGGGCGGTTGGTCTTCAATCTTCTACTG TTGAAGCGGGTAGCATGGGTTACGTTGGTTTAATCGTTCTTGCTATTACTATTGCTATCTATGCTTTCTTAGCAAAAGTA AACAAGCGTTGGTTAGCTATCCCAGTTTGTGCATTCACAGGCCTTGCTATTGCATTAGCATTGGGCGCTGGTTTCGATAT CGTATTCGAAACTGAAATGGGTATCCCAAACCTAAACCCAGTTTACTGGTGGGGTTCGACTTCTGAAGGTTGGATGCTTG GCTTGCCAAACGTTGAACACTTCATCGCTTCTCTACCATTTGCAATCCTAGCGGTAGCGATGTGGTCACCAGATTTCCTA GGTCACCGTATCTTCCAAGAACTAAACTACCCTAAAAAGTCTGAAAAAGTTCTGATGGACGTTGATGACACTATGACTAT GTGTTCTGTGCGTCAAATGGTAGGTACAGCGGTTGGTGGTGGTAACATCACTTCTTCTTGGGGTACTTACATGATCCCAG CAGCAATCGCGAAACGTCCAATTCCTGGCGGCGCAATCTTGCTTGGTTCTCTATGTATTATTGTTGCGATTCTTGGTTTC CCAATGGACGTTGCAGTATGGCCACCAGTGATGCGTGTTGCGCTACTTGTAGGTGTATCTCTACCTCTACTTGAAGCGGG TATGCAAATGGTTAAGGATTCAAAGGATTCTCAAGCAGCTGGTATCTGTATCTTCGGTTCAGCGGTTGTTAACCCTGTAT TAGCATGGGCTCTGACTATGCTTCTTGATAACAACGGTCTAATTGGTGATAAAGAGCGTGCGAAGCGTCTATCATTTGTA GACAAGATTGTAATCCCAGTTGGCGTTTTAGTTATCTGTTTAGTAGCAATGCTTGCAGTTGGTATGCTAGAAAGTCAATA TGGCCTAAAAGCTTGGCTATAA
Upstream 100 bases:
>100_bases TGCAACATAATATTAATAAGTTATAACTAAGAAATAACGCAATTACGCGAAATTTTATAATTCAATTTTAGAATTACTAA CATAAAAATATGAGGAATCT
Downstream 100 bases:
>100_bases TGCTCATTACTACACAAAAGTAGTATTGGGATTAAAAAAAAGTTTGGGTGGCAACCCCTGCCACTCAAATTTTTTCAACT TTTTTTGGCATTTATTGATT
Product: hypothetical protein
Products: NA
Alternate protein names: Xanthine/Uracil/Vitamin C Permease; Permease Family Protein
Number of amino acids: Translated: 513; Mature: 512
Protein sequence:
>513_residues MSDVVNNANSEVEEKSYKELHRPASEFESRSDYLDHELQIMKPRRFGLNLPGRDFRFELEDLVPALAGTIGIIAMYSAVM MSWADGLTQAWDHVNLGKDFAIEVARVEMLIPALLFCILASGFFNPKANLAGNHGPMIPLIGTIALAGAHPLALAILIGV FGLILSFLKGGSKLVNLTSEGTAGGLLIFLGLTGTMSQINSIQAWAVGLQSSTVEAGSMGYVGLIVLAITIAIYAFLAKV NKRWLAIPVCAFTGLAIALALGAGFDIVFETEMGIPNLNPVYWWGSTSEGWMLGLPNVEHFIASLPFAILAVAMWSPDFL GHRIFQELNYPKKSEKVLMDVDDTMTMCSVRQMVGTAVGGGNITSSWGTYMIPAAIAKRPIPGGAILLGSLCIIVAILGF PMDVAVWPPVMRVALLVGVSLPLLEAGMQMVKDSKDSQAAGICIFGSAVVNPVLAWALTMLLDNNGLIGDKERAKRLSFV DKIVIPVGVLVICLVAMLAVGMLESQYGLKAWL
Sequences:
>Translated_513_residues MSDVVNNANSEVEEKSYKELHRPASEFESRSDYLDHELQIMKPRRFGLNLPGRDFRFELEDLVPALAGTIGIIAMYSAVM MSWADGLTQAWDHVNLGKDFAIEVARVEMLIPALLFCILASGFFNPKANLAGNHGPMIPLIGTIALAGAHPLALAILIGV FGLILSFLKGGSKLVNLTSEGTAGGLLIFLGLTGTMSQINSIQAWAVGLQSSTVEAGSMGYVGLIVLAITIAIYAFLAKV NKRWLAIPVCAFTGLAIALALGAGFDIVFETEMGIPNLNPVYWWGSTSEGWMLGLPNVEHFIASLPFAILAVAMWSPDFL GHRIFQELNYPKKSEKVLMDVDDTMTMCSVRQMVGTAVGGGNITSSWGTYMIPAAIAKRPIPGGAILLGSLCIIVAILGF PMDVAVWPPVMRVALLVGVSLPLLEAGMQMVKDSKDSQAAGICIFGSAVVNPVLAWALTMLLDNNGLIGDKERAKRLSFV DKIVIPVGVLVICLVAMLAVGMLESQYGLKAWL >Mature_512_residues SDVVNNANSEVEEKSYKELHRPASEFESRSDYLDHELQIMKPRRFGLNLPGRDFRFELEDLVPALAGTIGIIAMYSAVMM SWADGLTQAWDHVNLGKDFAIEVARVEMLIPALLFCILASGFFNPKANLAGNHGPMIPLIGTIALAGAHPLALAILIGVF GLILSFLKGGSKLVNLTSEGTAGGLLIFLGLTGTMSQINSIQAWAVGLQSSTVEAGSMGYVGLIVLAITIAIYAFLAKVN KRWLAIPVCAFTGLAIALALGAGFDIVFETEMGIPNLNPVYWWGSTSEGWMLGLPNVEHFIASLPFAILAVAMWSPDFLG HRIFQELNYPKKSEKVLMDVDDTMTMCSVRQMVGTAVGGGNITSSWGTYMIPAAIAKRPIPGGAILLGSLCIIVAILGFP MDVAVWPPVMRVALLVGVSLPLLEAGMQMVKDSKDSQAAGICIFGSAVVNPVLAWALTMLLDNNGLIGDKERAKRLSFVD KIVIPVGVLVICLVAMLAVGMLESQYGLKAWL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54953; Mature: 54821
Theoretical pI: Translated: 5.43; Mature: 5.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDVVNNANSEVEEKSYKELHRPASEFESRSDYLDHELQIMKPRRFGLNLPGRDFRFELE CCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHEEECCHHCCCCCCCCCCEEEHH DLVPALAGTIGIIAMYSAVMMSWADGLTQAWDHVNLGKDFAIEVARVEMLIPALLFCILA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH SGFFNPKANLAGNHGPMIPLIGTIALAGAHPLALAILIGVFGLILSFLKGGSKLVNLTSE CCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC GTAGGLLIFLGLTGTMSQINSIQAWAVGLQSSTVEAGSMGYVGLIVLAITIAIYAFLAKV CCCCCEEEEEECCHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH NKRWLAIPVCAFTGLAIALALGAGFDIVFETEMGIPNLNPVYWWGSTSEGWMLGLPNVEH CCCEEEEHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCCCEEECCCHHH FIASLPFAILAVAMWSPDFLGHRIFQELNYPKKSEKVLMDVDDTMTMCSVRQMVGTAVGG HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCC GNITSSWGTYMIPAAIAKRPIPGGAILLGSLCIIVAILGFPMDVAVWPPVMRVALLVGVS CCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHCH LPLLEAGMQMVKDSKDSQAAGICIFGSAVVNPVLAWALTMLLDNNGLIGDKERAKRLSFV HHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH DKIVIPVGVLVICLVAMLAVGMLESQYGLKAWL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCC >Mature Secondary Structure SDVVNNANSEVEEKSYKELHRPASEFESRSDYLDHELQIMKPRRFGLNLPGRDFRFELE CCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHEEECCHHCCCCCCCCCCEEEHH DLVPALAGTIGIIAMYSAVMMSWADGLTQAWDHVNLGKDFAIEVARVEMLIPALLFCILA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH SGFFNPKANLAGNHGPMIPLIGTIALAGAHPLALAILIGVFGLILSFLKGGSKLVNLTSE CCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC GTAGGLLIFLGLTGTMSQINSIQAWAVGLQSSTVEAGSMGYVGLIVLAITIAIYAFLAKV CCCCCEEEEEECCHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH NKRWLAIPVCAFTGLAIALALGAGFDIVFETEMGIPNLNPVYWWGSTSEGWMLGLPNVEH CCCEEEEHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCCCEEECCCHHH FIASLPFAILAVAMWSPDFLGHRIFQELNYPKKSEKVLMDVDDTMTMCSVRQMVGTAVGG HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCC GNITSSWGTYMIPAAIAKRPIPGGAILLGSLCIIVAILGFPMDVAVWPPVMRVALLVGVS CCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHCH LPLLEAGMQMVKDSKDSQAAGICIFGSAVVNPVLAWALTMLLDNNGLIGDKERAKRLSFV HHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH DKIVIPVGVLVICLVAMLAVGMLESQYGLKAWL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA