BacMap

Definition	Vibrio splendidus LGP32 chromosome 1, complete genome.
Accession	NC_011753
Length	3,299,303

Click here to switch to the map view.

The map label for this gene is yciK [H]

Identifier: 218709037

GI number: 218709037

Start: 1089225

End: 1090001

Strand: Reverse

Name: yciK [H]

Synonym: VS_1043

Alternate gene names: 218709037

Gene position: 1090001-1089225 (Counterclockwise)

Preceding gene: 218709039

Following gene: 218709036

Centisome position: 33.04

GC content: 45.17

Gene sequence:

>777_bases
ATGACGAACATAATAAAAGAAAGAAGGATAAGCACAGTGGATTACCCAATCTCTACAGATGCCCTCAAAGATAAAGTAAT
TTTGGTTACAGGTGCCGGTGCTGGCATTGGTCGCCAAGCCGCGCTAAGTTTCGCTCAACATGGTGCAACTGTTATTCTGT
TAGGACGCAATGTCAAAAACCTTGAATTGATTTACGATGAAATCGAAAGCGCTGGTTACCCACAGCCTGCGATTATCCCA
TTGGATTTAAAAGGCGCGACAAAACAGAACTACATCGACATGGCTGAAACCATTGAATCACAGTTCGGTCGTTTAGATGG
TCTACTGCATAACGCAGGTGTGCTTGGCACGTTAAGTCCATTCGATCAAATCGATGAAGAAACGTTTGATGGCGTCATGC
AAATCAACGTTAAAGCTGAATTTCTAATGACTCAAGCATTACTGCCTGTCATTAAAAAAGCTGAAGCCGGTCGTATCGTA
TTCACCTCTTCTACAGTTGGTCACTCTGGCCGTGCGTTCTGGGGCACTTACGCGATTTCTAAGTTTGCGACTGAAGGCAT
GATGCAAATCCTAGCGGACGAGCTTGAAGACACCAACATCCGTGTAAACGCGATCAACCCTGGCGGCACTCAAACACGCA
TGCGTGCAAAAGCGTACCCAGGTGAAGATGCGAACAAGCTAAAAACGCCACTCGACATCATCCCGTTGTATCTACACTTA
ATGAACCCAAGTGTGACAGACATTAATGGCCAATGTATCGATGCTCAACCTAAGTAA

Upstream 100 bases:

>100_bases
TCCCCTATTGTATGAATTAGTGTATTGTAACCATCTTGTCACGATTACCAAGAATTTCTCATCATTCCTGCGGTTATCTG
TGTGATTAAACATCAATGGA

Downstream 100 bases:

>100_bases
CTGATATCATTAATCAATAGTAAAAAGTCGCTTCCATAGCGGCTTTTTTTGTATCTAAATCAATCAACTAACACTTACTT
CCGCTAATTTTCATCATTTC

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MTNIIKERRISTVDYPISTDALKDKVILVTGAGAGIGRQAALSFAQHGATVILLGRNVKNLELIYDEIESAGYPQPAIIP
LDLKGATKQNYIDMAETIESQFGRLDGLLHNAGVLGTLSPFDQIDEETFDGVMQINVKAEFLMTQALLPVIKKAEAGRIV
FTSSTVGHSGRAFWGTYAISKFATEGMMQILADELEDTNIRVNAINPGGTQTRMRAKAYPGEDANKLKTPLDIIPLYLHL
MNPSVTDINGQCIDAQPK

Sequences:

>Translated_258_residues
MTNIIKERRISTVDYPISTDALKDKVILVTGAGAGIGRQAALSFAQHGATVILLGRNVKNLELIYDEIESAGYPQPAIIP
LDLKGATKQNYIDMAETIESQFGRLDGLLHNAGVLGTLSPFDQIDEETFDGVMQINVKAEFLMTQALLPVIKKAEAGRIV
FTSSTVGHSGRAFWGTYAISKFATEGMMQILADELEDTNIRVNAINPGGTQTRMRAKAYPGEDANKLKTPLDIIPLYLHL
MNPSVTDINGQCIDAQPK
>Mature_257_residues
TNIIKERRISTVDYPISTDALKDKVILVTGAGAGIGRQAALSFAQHGATVILLGRNVKNLELIYDEIESAGYPQPAIIPL
DLKGATKQNYIDMAETIESQFGRLDGLLHNAGVLGTLSPFDQIDEETFDGVMQINVKAEFLMTQALLPVIKKAEAGRIVF
TSSTVGHSGRAFWGTYAISKFATEGMMQILADELEDTNIRVNAINPGGTQTRMRAKAYPGEDANKLKTPLDIIPLYLHLM
NPSVTDINGQCIDAQPK

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI4504505, Length=241, Percent_Identity=32.3651452282158, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI157739938, Length=194, Percent_Identity=30.9278350515464, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI32483357, Length=193, Percent_Identity=32.6424870466321, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI20149619, Length=207, Percent_Identity=32.8502415458937, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI142976729, Length=203, Percent_Identity=29.5566502463054, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI126723191, Length=187, Percent_Identity=32.0855614973262, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI4503817, Length=195, Percent_Identity=28.7179487179487, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI7705925, Length=216, Percent_Identity=30.0925925925926, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI210032110, Length=197, Percent_Identity=26.9035532994924, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI19923817, Length=254, Percent_Identity=24.8031496062992, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI5031737, Length=243, Percent_Identity=25.9259259259259, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI223718074, Length=195, Percent_Identity=29.7435897435897, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI10190704, Length=189, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI33667109, Length=187, Percent_Identity=28.8770053475936, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI310128830, Length=210, Percent_Identity=28.5714285714286, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI310115468, Length=210, Percent_Identity=28.5714285714286, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI109715829, Length=205, Percent_Identity=29.2682926829268, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI166795268, Length=220, Percent_Identity=30.4545454545455, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI40548397, Length=200, Percent_Identity=29, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI214010158, Length=200, Percent_Identity=29, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI214010156, Length=200, Percent_Identity=29, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI22758144, Length=200, Percent_Identity=29, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI40807363, Length=196, Percent_Identity=28.0612244897959, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI7657478, Length=214, Percent_Identity=26.6355140186916, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI15277342, Length=233, Percent_Identity=28.755364806867, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI25282469, Length=215, Percent_Identity=29.7674418604651, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI66933014, Length=211, Percent_Identity=33.175355450237, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI7706318, Length=203, Percent_Identity=26.6009852216749, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI19743808, Length=196, Percent_Identity=26.530612244898, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI302344755, Length=104, Percent_Identity=37.5, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI150247226, Length=203, Percent_Identity=27.5862068965517, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI146231950, Length=215, Percent_Identity=29.3023255813954, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI1787526, Length=245, Percent_Identity=52.6530612244898, Blast_Score=249, Evalue=1e-67,
Organism=Escherichia coli, GI87082100, Length=194, Percent_Identity=36.0824742268041, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1790717, Length=195, Percent_Identity=31.7948717948718, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787905, Length=239, Percent_Identity=30.1255230125523, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787335, Length=199, Percent_Identity=30.6532663316583, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1786812, Length=204, Percent_Identity=26.4705882352941, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789208, Length=252, Percent_Identity=26.5873015873016, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786701, Length=199, Percent_Identity=31.1557788944724, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787820, Length=215, Percent_Identity=28.3720930232558, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1789378, Length=252, Percent_Identity=25.3968253968254, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788459, Length=192, Percent_Identity=29.1666666666667, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082160, Length=246, Percent_Identity=24.7967479674797, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI2367175, Length=243, Percent_Identity=27.1604938271605, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17562908, Length=195, Percent_Identity=36.4102564102564, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17562906, Length=222, Percent_Identity=31.981981981982, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17551412, Length=216, Percent_Identity=34.2592592592593, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17561402, Length=222, Percent_Identity=29.2792792792793, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17560220, Length=194, Percent_Identity=33.5051546391753, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI71994604, Length=189, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI193204405, Length=193, Percent_Identity=34.7150259067358, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI115534694, Length=214, Percent_Identity=34.1121495327103, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17531453, Length=194, Percent_Identity=32.9896907216495, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17568967, Length=246, Percent_Identity=29.6747967479675, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17560150, Length=213, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17560676, Length=200, Percent_Identity=31.5, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17562910, Length=226, Percent_Identity=29.646017699115, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17562990, Length=189, Percent_Identity=34.3915343915344, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI193210355, Length=205, Percent_Identity=28.2926829268293, Blast_Score=78, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17544670, Length=225, Percent_Identity=29.3333333333333, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=213, Percent_Identity=29.5774647887324, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71994600, Length=188, Percent_Identity=31.9148936170213, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI115534660, Length=197, Percent_Identity=28.9340101522843, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=226, Percent_Identity=29.2035398230088, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17557780, Length=195, Percent_Identity=26.6666666666667, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17567345, Length=221, Percent_Identity=27.1493212669683, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17559104, Length=219, Percent_Identity=26.4840182648402, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=235, Percent_Identity=30.6382978723404, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=202, Percent_Identity=28.2178217821782, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71997402, Length=184, Percent_Identity=30.9782608695652, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17536025, Length=259, Percent_Identity=27.027027027027, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193203115, Length=174, Percent_Identity=29.8850574712644, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193203117, Length=171, Percent_Identity=30.4093567251462, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17536651, Length=258, Percent_Identity=27.1317829457364, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17532791, Length=149, Percent_Identity=34.2281879194631, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=179, Percent_Identity=29.0502793296089, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17570069, Length=192, Percent_Identity=28.6458333333333, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17565030, Length=237, Percent_Identity=28.2700421940928, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17563726, Length=216, Percent_Identity=29.1666666666667, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71982365, Length=193, Percent_Identity=26.9430051813472, Blast_Score=64, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6322861, Length=233, Percent_Identity=32.1888412017167, Blast_Score=108, Evalue=7e-25,
Organism=Saccharomyces cerevisiae, GI6323882, Length=222, Percent_Identity=30.1801801801802, Blast_Score=82, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24644339, Length=210, Percent_Identity=36.6666666666667, Blast_Score=111, Evalue=4e-25,
Organism=Drosophila melanogaster, GI23397609, Length=190, Percent_Identity=38.4210526315789, Blast_Score=107, Evalue=6e-24,
Organism=Drosophila melanogaster, GI24643142, Length=239, Percent_Identity=35.9832635983264, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI28571526, Length=192, Percent_Identity=36.9791666666667, Blast_Score=100, Evalue=8e-22,
Organism=Drosophila melanogaster, GI18859837, Length=243, Percent_Identity=33.7448559670782, Blast_Score=97, Evalue=9e-21,
Organism=Drosophila melanogaster, GI21355319, Length=215, Percent_Identity=29.3023255813954, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI21357041, Length=199, Percent_Identity=32.1608040201005, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI21358495, Length=213, Percent_Identity=28.6384976525822, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=28.2258064516129, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI281364892, Length=192, Percent_Identity=29.6875, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24640492, Length=180, Percent_Identity=28.8888888888889, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI45553409, Length=200, Percent_Identity=30.5, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24647948, Length=200, Percent_Identity=30.5, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24647946, Length=202, Percent_Identity=29.7029702970297, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24580925, Length=226, Percent_Identity=26.5486725663717, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21357673, Length=201, Percent_Identity=27.363184079602, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24648693, Length=199, Percent_Identity=27.6381909547739, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21355889, Length=199, Percent_Identity=27.6381909547739, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21355631, Length=216, Percent_Identity=27.3148148148148, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45554248, Length=229, Percent_Identity=29.6943231441048, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24640117, Length=229, Percent_Identity=29.6943231441048, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI221510726, Length=193, Percent_Identity=31.6062176165803, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI21356301, Length=189, Percent_Identity=28.042328042328, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28048; Mature: 27916

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNIIKERRISTVDYPISTDALKDKVILVTGAGAGIGRQAALSFAQHGATVILLGRNVKN
CCCCHHHHCCCEECCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCH
LELIYDEIESAGYPQPAIIPLDLKGATKQNYIDMAETIESQFGRLDGLLHNAGVLGTLSP
HHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCC
FDQIDEETFDGVMQINVKAEFLMTQALLPVIKKAEAGRIVFTSSTVGHSGRAFWGTYAIS
HHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHH
KFATEGMMQILADELEDTNIRVNAINPGGTQTRMRAKAYPGEDANKLKTPLDIIPLYLHL
HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEECCCCCCCHHHHCCCHHHHHHHHHH
MNPSVTDINGQCIDAQPK
CCCCCCCCCCEEECCCCC
>Mature Secondary Structure 
TNIIKERRISTVDYPISTDALKDKVILVTGAGAGIGRQAALSFAQHGATVILLGRNVKN
CCCHHHHCCCEECCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCH
LELIYDEIESAGYPQPAIIPLDLKGATKQNYIDMAETIESQFGRLDGLLHNAGVLGTLSP
HHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCC
FDQIDEETFDGVMQINVKAEFLMTQALLPVIKKAEAGRIVFTSSTVGHSGRAFWGTYAIS
HHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHH
KFATEGMMQILADELEDTNIRVNAINPGGTQTRMRAKAYPGEDANKLKTPLDIIPLYLHL
HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEECCCCCCCHHHHCCCHHHHHHHHHH
MNPSVTDINGQCIDAQPK
CCCCCCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1885549 [H]