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The map label for this gene is ycgB [H]

Identifier: 218709039

GI number: 218709039

Start: 1091369

End: 1092931

Strand: Reverse

Name: ycgB [H]

Synonym: VS_1045

Alternate gene names: 218709039

Gene position: 1092931-1091369 (Counterclockwise)

Preceding gene: 218709040

Following gene: 218709037

Centisome position: 33.13

GC content: 44.85

Gene sequence:

>1563_bases
ATGACAGCGAAATCAAACGTTGCAGAAAAAGACAAAGCGACACAGAAGAGAAACGATAAGATGCTGCCTGATGGTCCAGA
TTGGACGTTCAACCTCTTAGAGCAATATCACGTAGAAATTAAGCGTGTGGCGCAGCATTATCGTTTGGACACTTACCCGA
ACCAGATTGAAGTAATTACCTCTGAGCAGATGATGGATGCTTACTCCAGTATTGGTATGCCCATCAATTACAACCACTGG
TCTTTTGGTAAGAAGTTCATCCAAACCGAGCAAAACTACAAACACGGCCAAATGGGCTTAGCGTACGAGATCGTGATCAA
CTCAGATCCGTGTATCGCTTACTTAATGGAAGAGAACACGGTCACGATGCAAGCGTTGGTAATGGCACACGCTTGTTACG
GCCATAACTCGTTCTTTAAGGGCAACTACCTATTCCAAACCTGGACCGATGCCAGTTCCATCATCGACTACCTATTATTC
GCTAAAAAATACATTACCGATTGTGAAGAAAAATATGGTGTTGCCGAAGTCGAACAACTTCTCGACTCTTGTCATGCCCT
CATGAATTACGGCGTAGACAGATACAAACGCCCTGAGAAGATTTCCATAGCTGAAGAGACAGCAAGGCAAGAAGAACGTG
AAGCGTATCTGCAATCTCAAGTCAATGAGCTGTGGAGAACTGTGCCTAAAAATCAAGACAAGGAAAAAGAGACCAAAATT
CGCTTTCCTAGCGAACCTCAAGAAAACATTCTCTACTTTATCGAGAAGAACGCACCACTACTTGAACCTTGGCAGCGTGA
GTGTGTTCGTATCGTTCGAAAGGTGAGCCAATACTTCTACCCTCAAAAGCAAACTCAAGTAATGAACGAAGGCTGGGCAA
CCTTCTGGCACTACACCATTCTTAACCACCTTTACGACGAAGGCTTGGTGAGTGACAAGTTCATATTAGAATTCCTACAC
AGCCACACCAGCGTGGTCGCACAGCCCGCCTACAACAGCCCTTATTTCAGCGGGATAAACCCTTATGCGCTTGGCTTTGC
GATGTTTAGAGACATCCGACGTATCTGTGAAGAACCAACCGATGAAGACAAAGAGTGGTTCCCTGAGTTAGCCGGAAGTG
ATTGGTTAGAAGCGGTGCACTTTGCCATGCACAATTTCAAAGATGAAAGCTTCATTAGCCAATACCTCTCACCAAAGATC
ATTCGAGACTTTAAACTATTTTCTGTGCTCGACGACGACCGCAAAAACACCATTGAGATAAGTGCTATTCACGATGACCC
AGGCTATCGCTTGATTCGTGAAAAGCTTGCGGCGCAATACAACCTAAGTAACCTTGAGCCGAATATTCAGGTGTTTAACG
TCGATGTTCGCGGTGACCGCTCGATGACACTGCAGTATGTGCCTCACGGCCGTATACCGCTTGATAAAGGCTACGACGAA
GTGATGAAACATCTCTATCGCTTATGGGGCTTTGATGTAATTTTGGAAGAGCTCAAAGATACGGGTCATAGAGAGATTCT
GACTACTTGTCCAAAACGTAATGATTATGGAGCCAAGATTTAA

Upstream 100 bases:

>100_bases
GCTTCGATAACTTCGCCATGAAGAACATTAAAACGGTGGATGATATTTTTCCTGTGTTTAGAGAACTGTTCCAGAAAGAG
ACAGCGTAAGGGGGCTTGCC

Downstream 100 bases:

>100_bases
TATCAATCACAGTAAGTAAGTGCTTGGTATAAAACTCCGCTCCCCCTACAACATAGTGGTCACCCGCTCGGAAGTGGAGC
AATAAAAAAGCGCATAAGTC

Product: SpoVR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 519

Protein sequence:

>520_residues
MTAKSNVAEKDKATQKRNDKMLPDGPDWTFNLLEQYHVEIKRVAQHYRLDTYPNQIEVITSEQMMDAYSSIGMPINYNHW
SFGKKFIQTEQNYKHGQMGLAYEIVINSDPCIAYLMEENTVTMQALVMAHACYGHNSFFKGNYLFQTWTDASSIIDYLLF
AKKYITDCEEKYGVAEVEQLLDSCHALMNYGVDRYKRPEKISIAEETARQEEREAYLQSQVNELWRTVPKNQDKEKETKI
RFPSEPQENILYFIEKNAPLLEPWQRECVRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDEGLVSDKFILEFLH
SHTSVVAQPAYNSPYFSGINPYALGFAMFRDIRRICEEPTDEDKEWFPELAGSDWLEAVHFAMHNFKDESFISQYLSPKI
IRDFKLFSVLDDDRKNTIEISAIHDDPGYRLIREKLAAQYNLSNLEPNIQVFNVDVRGDRSMTLQYVPHGRIPLDKGYDE
VMKHLYRLWGFDVILEELKDTGHREILTTCPKRNDYGAKI

Sequences:

>Translated_520_residues
MTAKSNVAEKDKATQKRNDKMLPDGPDWTFNLLEQYHVEIKRVAQHYRLDTYPNQIEVITSEQMMDAYSSIGMPINYNHW
SFGKKFIQTEQNYKHGQMGLAYEIVINSDPCIAYLMEENTVTMQALVMAHACYGHNSFFKGNYLFQTWTDASSIIDYLLF
AKKYITDCEEKYGVAEVEQLLDSCHALMNYGVDRYKRPEKISIAEETARQEEREAYLQSQVNELWRTVPKNQDKEKETKI
RFPSEPQENILYFIEKNAPLLEPWQRECVRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDEGLVSDKFILEFLH
SHTSVVAQPAYNSPYFSGINPYALGFAMFRDIRRICEEPTDEDKEWFPELAGSDWLEAVHFAMHNFKDESFISQYLSPKI
IRDFKLFSVLDDDRKNTIEISAIHDDPGYRLIREKLAAQYNLSNLEPNIQVFNVDVRGDRSMTLQYVPHGRIPLDKGYDE
VMKHLYRLWGFDVILEELKDTGHREILTTCPKRNDYGAKI
>Mature_519_residues
TAKSNVAEKDKATQKRNDKMLPDGPDWTFNLLEQYHVEIKRVAQHYRLDTYPNQIEVITSEQMMDAYSSIGMPINYNHWS
FGKKFIQTEQNYKHGQMGLAYEIVINSDPCIAYLMEENTVTMQALVMAHACYGHNSFFKGNYLFQTWTDASSIIDYLLFA
KKYITDCEEKYGVAEVEQLLDSCHALMNYGVDRYKRPEKISIAEETARQEEREAYLQSQVNELWRTVPKNQDKEKETKIR
FPSEPQENILYFIEKNAPLLEPWQRECVRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDEGLVSDKFILEFLHS
HTSVVAQPAYNSPYFSGINPYALGFAMFRDIRRICEEPTDEDKEWFPELAGSDWLEAVHFAMHNFKDESFISQYLSPKII
RDFKLFSVLDDDRKNTIEISAIHDDPGYRLIREKLAAQYNLSNLEPNIQVFNVDVRGDRSMTLQYVPHGRIPLDKGYDEV
MKHLYRLWGFDVILEELKDTGHREILTTCPKRNDYGAKI

Specific function: Unknown

COG id: COG2719

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis spoVR [H]

Homologues:

Organism=Escherichia coli, GI1787437, Length=501, Percent_Identity=74.6506986027944, Blast_Score=821, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007390 [H]

Pfam domain/function: PF04293 SpoVR [H]

EC number: NA

Molecular weight: Translated: 61152; Mature: 61021

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAKSNVAEKDKATQKRNDKMLPDGPDWTFNLLEQYHVEIKRVAQHYRLDTYPNQIEVIT
CCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
SEQMMDAYSSIGMPINYNHWSFGKKFIQTEQNYKHGQMGLAYEIVINSDPCIAYLMEENT
HHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEEEEECCCC
VTMQALVMAHACYGHNSFFKGNYLFQTWTDASSIIDYLLFAKKYITDCEEKYGVAEVEQL
HHHHHHHHHHHHHCCCCEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
LDSCHALMNYGVDRYKRPEKISIAEETARQEEREAYLQSQVNELWRTVPKNQDKEKETKI
HHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCC
RFPSEPQENILYFIEKNAPLLEPWQRECVRIVRKVSQYFYPQKQTQVMNEGWATFWHYTI
CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHH
LNHLYDEGLVSDKFILEFLHSHTSVVAQPAYNSPYFSGINPYALGFAMFRDIRRICEEPT
HHHHHHCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
DEDKEWFPELAGSDWLEAVHFAMHNFKDESFISQYLSPKIIRDFKLFSVLDDDRKNTIEI
CCCHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEE
SAIHDDPGYRLIREKLAAQYNLSNLEPNIQVFNVDVRGDRSMTLQYVPHGRIPLDKGYDE
EEEECCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCHHH
VMKHLYRLWGFDVILEELKDTGHREILTTCPKRNDYGAKI
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TAKSNVAEKDKATQKRNDKMLPDGPDWTFNLLEQYHVEIKRVAQHYRLDTYPNQIEVIT
CCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
SEQMMDAYSSIGMPINYNHWSFGKKFIQTEQNYKHGQMGLAYEIVINSDPCIAYLMEENT
HHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEEEEECCCC
VTMQALVMAHACYGHNSFFKGNYLFQTWTDASSIIDYLLFAKKYITDCEEKYGVAEVEQL
HHHHHHHHHHHHHCCCCEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
LDSCHALMNYGVDRYKRPEKISIAEETARQEEREAYLQSQVNELWRTVPKNQDKEKETKI
HHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCC
RFPSEPQENILYFIEKNAPLLEPWQRECVRIVRKVSQYFYPQKQTQVMNEGWATFWHYTI
CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHH
LNHLYDEGLVSDKFILEFLHSHTSVVAQPAYNSPYFSGINPYALGFAMFRDIRRICEEPT
HHHHHHCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
DEDKEWFPELAGSDWLEAVHFAMHNFKDESFISQYLSPKIIRDFKLFSVLDDDRKNTIEI
CCCHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEE
SAIHDDPGYRLIREKLAAQYNLSNLEPNIQVFNVDVRGDRSMTLQYVPHGRIPLDKGYDE
EEEECCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCHHH
VMKHLYRLWGFDVILEELKDTGHREILTTCPKRNDYGAKI
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7906689 [H]