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The map label for this gene is 218708955

Identifier: 218708955

GI number: 218708955

Start: 990515

End: 991198

Strand: Reverse

Name: 218708955

Synonym: VS_0959

Alternate gene names: NA

Gene position: 991198-990515 (Counterclockwise)

Preceding gene: 218708956

Following gene: 218708953

Centisome position: 30.04

GC content: 46.49

Gene sequence:

>684_bases
ATGGAAATAAAAAGCTCAATTATATTGGTAACATCTGCCGGCTCGCGATTGGGAGGAACGATTGCGAATCACTTTGTTAA
CCTTGGAGCCACTGTCATCCTTTGTGATAAAGACGCAAAAGCACTTCAGGCGACTTATTTACAATGTGCCCGCTTCTCCG
ACTCTGTTTACCATTACACGCTCGAAGGGAATGACAGCCAAGCTATCCTCAGCGTGTATGATTTTATTCAAACCACCTTC
AACACGACGCCCGATGTTCTGGTCAACAATTGGATAAGTTCCCCAATGCCTAGTCTAATTGGCGATCAGCCTGTCAGTAG
CTTTATCAATGATCTGTCTGCTATGGCATCGACCCTTTTCGCATTTGGGCAAATCAGTGCAGAGAGGTTACGAGAGCAAG
ACAAAGAAGGCGTAATTGTGAATGTGATATCTCACGATGACTTTCATGATGTGTCAGGCTTAGAGAGCGCAAACTCCATG
ATTACCGGCTTTACCCATAGCTGGGCGAAAGAACTGACGCCATTTGGTATTCGAGTCGGCGGTGTTGTCCCTGCCGTTCA
TAACTCCGAAGGCAAGCTCAATGGGTGTCACTGGGCACAACTGCAAGACGAACTGACCAGAACAACGGAATACATTGTCT
CTAATGATTACTTTAGCGGACGGGTTGTAGCTGCAGAGGTGTAA

Upstream 100 bases:

>100_bases
AAGTTATCAATGGGTACACCTTAGTTTGAGCCAATTCACACCCGCTGTATGAAATTTAACCCATCCTTACCCAACATGGA
CGATTTGCTTAGGTACTGGG

Downstream 100 bases:

>100_bases
GCATCTGCGGAGGTGTAAATGGATAATAAAAATAAACCTATTTCAATTCACATAAAAAAAGCCCCAACCTTTCGGTTGGG
GCTTTGAATTTCCCGATAGA

Product: short chain dehydrogenase

Products: NA

Alternate protein names: Short Chain Dehydrogenase; 3-Hydroxyacyl-CoA Dehydrogenase; Short-Chain Dehydrogenase/Reductase SDR; Oxidoreductase Short-Chain Dehydrogenase/Reductase Family

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MEIKSSIILVTSAGSRLGGTIANHFVNLGATVILCDKDAKALQATYLQCARFSDSVYHYTLEGNDSQAILSVYDFIQTTF
NTTPDVLVNNWISSPMPSLIGDQPVSSFINDLSAMASTLFAFGQISAERLREQDKEGVIVNVISHDDFHDVSGLESANSM
ITGFTHSWAKELTPFGIRVGGVVPAVHNSEGKLNGCHWAQLQDELTRTTEYIVSNDYFSGRVVAAEV

Sequences:

>Translated_227_residues
MEIKSSIILVTSAGSRLGGTIANHFVNLGATVILCDKDAKALQATYLQCARFSDSVYHYTLEGNDSQAILSVYDFIQTTF
NTTPDVLVNNWISSPMPSLIGDQPVSSFINDLSAMASTLFAFGQISAERLREQDKEGVIVNVISHDDFHDVSGLESANSM
ITGFTHSWAKELTPFGIRVGGVVPAVHNSEGKLNGCHWAQLQDELTRTTEYIVSNDYFSGRVVAAEV
>Mature_227_residues
MEIKSSIILVTSAGSRLGGTIANHFVNLGATVILCDKDAKALQATYLQCARFSDSVYHYTLEGNDSQAILSVYDFIQTTF
NTTPDVLVNNWISSPMPSLIGDQPVSSFINDLSAMASTLFAFGQISAERLREQDKEGVIVNVISHDDFHDVSGLESANSM
ITGFTHSWAKELTPFGIRVGGVVPAVHNSEGKLNGCHWAQLQDELTRTTEYIVSNDYFSGRVVAAEV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24698; Mature: 24698

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIKSSIILVTSAGSRLGGTIANHFVNLGATVILCDKDAKALQATYLQCARFSDSVYHYT
CCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEE
LEGNDSQAILSVYDFIQTTFNTTPDVLVNNWISSPMPSLIGDQPVSSFINDLSAMASTLF
EECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHH
AFGQISAERLREQDKEGVIVNVISHDDFHDVSGLESANSMITGFTHSWAKELTPFGIRVG
HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHCCCHHHHHHHHCCHHHHHHHCCCCCEEEC
GVVPAVHNSEGKLNGCHWAQLQDELTRTTEYIVSNDYFSGRVVAAEV
CEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
>Mature Secondary Structure
MEIKSSIILVTSAGSRLGGTIANHFVNLGATVILCDKDAKALQATYLQCARFSDSVYHYT
CCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEE
LEGNDSQAILSVYDFIQTTFNTTPDVLVNNWISSPMPSLIGDQPVSSFINDLSAMASTLF
EECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHH
AFGQISAERLREQDKEGVIVNVISHDDFHDVSGLESANSMITGFTHSWAKELTPFGIRVG
HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHCCCHHHHHHHHCCHHHHHHHCCCCCEEEC
GVVPAVHNSEGKLNGCHWAQLQDELTRTTEYIVSNDYFSGRVVAAEV
CEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA