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The map label for this gene is ychE [H]

Identifier: 218708953

GI number: 218708953

Start: 986381

End: 987019

Strand: Reverse

Name: ychE [H]

Synonym: VS_0957

Alternate gene names: 218708953

Gene position: 987019-986381 (Counterclockwise)

Preceding gene: 218708955

Following gene: 218708952

Centisome position: 29.92

GC content: 47.42

Gene sequence:

>639_bases
ATGCAAGGCTTAGAACTCGCAATTTTTATGCAATTCTTCCTTGGGCTTGTTGCTGCCGTAAACCCAATCGGCATCATGCC
TGTTTTTGTTTCCCTTACTGCACATATGCCACCAGAAGAGAGGAACAGGACCGCATTACAAGCCAACATTGCTGTTGCCG
TTATCCTGATTGTGTCGCTTGTCGCGGGGCAAATGCTGCTTGATATGTTTAGCATCTCGCTGGATTCATTTCGTGTTGCA
GGTGGTTTGCTATTATTGAGCATCGCATTTTCGATGATGAGCGGTAAGCTCGGTGAAGATAAGCAGAATAAACAAGAGAA
ATCTGAATACATCAGCAAGGAGCAAATCGGTGTTGTTCCTCTTGCTATGCCATTAATGGCGGGCCCCGGGGCAATCAGCT
CGACCATTGTTTACGGATCTCGTTACCCTGCAGCCATTGATACTGTGGGAATTGGCATTAGCATCATCGCGTTTGCAACC
TGCTCTTGGCTTCTGTTCCGTTCAGCGCCGGTTATCGTTCGCTTTTTAGGTCAAACGGGTATCAATGTGATCACGCGTAT
CATGGGCTTGATTCTTGGCGCATTGGGCATCGAGTTCATCGCCAATGGCCTACGTAATTTGTTCCCAGGTTTGGCATAA

Upstream 100 bases:

>100_bases
TTCATTCGTGCAAATCCGATTTGTCCCTTACATTACGCGCTCAGACTATTCACAGAATCAAACCTTCAACCTTAAAATTC
GCTAACTGGAGATCGCTCTC

Downstream 100 bases:

>100_bases
CGTTTAACGGTAATCCGTTGCTCTATAAAGGGCAACAATATTGCAATATAGATGAGGCGAGTAAAGCAATTGGGCTTTCA
CTCGCCTCGTTATTATGAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MQGLELAIFMQFFLGLVAAVNPIGIMPVFVSLTAHMPPEERNRTALQANIAVAVILIVSLVAGQMLLDMFSISLDSFRVA
GGLLLLSIAFSMMSGKLGEDKQNKQEKSEYISKEQIGVVPLAMPLMAGPGAISSTIVYGSRYPAAIDTVGIGISIIAFAT
CSWLLFRSAPVIVRFLGQTGINVITRIMGLILGALGIEFIANGLRNLFPGLA

Sequences:

>Translated_212_residues
MQGLELAIFMQFFLGLVAAVNPIGIMPVFVSLTAHMPPEERNRTALQANIAVAVILIVSLVAGQMLLDMFSISLDSFRVA
GGLLLLSIAFSMMSGKLGEDKQNKQEKSEYISKEQIGVVPLAMPLMAGPGAISSTIVYGSRYPAAIDTVGIGISIIAFAT
CSWLLFRSAPVIVRFLGQTGINVITRIMGLILGALGIEFIANGLRNLFPGLA
>Mature_212_residues
MQGLELAIFMQFFLGLVAAVNPIGIMPVFVSLTAHMPPEERNRTALQANIAVAVILIVSLVAGQMLLDMFSISLDSFRVA
GGLLLLSIAFSMMSGKLGEDKQNKQEKSEYISKEQIGVVPLAMPLMAGPGAISSTIVYGSRYPAAIDTVGIGISIIAFAT
CSWLLFRSAPVIVRFLGQTGINVITRIMGLILGALGIEFIANGLRNLFPGLA

Specific function: Unknown

COG id: COG2095

COG function: function code U; Multiple antibiotic transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0056 (marC) family [H]

Homologues:

Organism=Escherichia coli, GI1787494, Length=208, Percent_Identity=60.0961538461538, Blast_Score=258, Evalue=3e-70,
Organism=Escherichia coli, GI1787809, Length=194, Percent_Identity=35.5670103092784, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1789842, Length=195, Percent_Identity=26.6666666666667, Blast_Score=84, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002771 [H]

Pfam domain/function: PF01914 MarC [H]

EC number: NA

Molecular weight: Translated: 22542; Mature: 22542

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGLELAIFMQFFLGLVAAVNPIGIMPVFVSLTAHMPPEERNRTALQANIAVAVILIVSL
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHH
VAGQMLLDMFSISLDSFRVAGGLLLLSIAFSMMSGKLGEDKQNKQEKSEYISKEQIGVVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHH
LAMPLMAGPGAISSTIVYGSRYPAAIDTVGIGISIIAFATCSWLLFRSAPVIVRFLGQTG
HHHHHHCCCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
INVITRIMGLILGALGIEFIANGLRNLFPGLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQGLELAIFMQFFLGLVAAVNPIGIMPVFVSLTAHMPPEERNRTALQANIAVAVILIVSL
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHH
VAGQMLLDMFSISLDSFRVAGGLLLLSIAFSMMSGKLGEDKQNKQEKSEYISKEQIGVVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHH
LAMPLMAGPGAISSTIVYGSRYPAAIDTVGIGISIIAFATCSWLLFRSAPVIVRFLGQTG
HHHHHHCCCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
INVITRIMGLILGALGIEFIANGLRNLFPGLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2015910; 9097039; 9278503 [H]